RNA id: TU167187


Basic Information

Item Value
RNA id TU167187
length 295
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G124324
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16280584 ~ 16280878 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAAAAGAACaatatgtattttttgtgtTCCTTGCTGCCCCATGAAATCCAATCTTGGCATTATCCTTGCTTTATTTTTAGGAGAGTGGTCATGATTTTGGTGTTGGAAATACTGTAAGTCCTCCATGTGTTGGGCGTAGTTTAAAATGATGACAAAATTCTTATATTACATTGTGTAAAATACCCCTCTTAATACTTATGTACACTTTTAACAGCATAAATGGTTTTGTGCAATATTTGAGATTCATTTTGCAGGATCTGAGCCCCTGTGTGTTTTCATAATAAAGTATGTGTA

Function

GO:

id name namespace
GO:0005507 copper ion binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167167 lncRNA downstream 65107 16207699 ~ 16215477 (-) False LOC120570587
TU167158 lncRNA downstream 178229 16102156 ~ 16102355 (-) True G124304
XR_005640868.1 lncRNA downstream 378895 15864532 ~ 15901689 (-) True LOC120569338
XR_005640867.1 lncRNA downstream 378895 15865076 ~ 15901689 (-) False LOC120569338
TU167049 lncRNA downstream 378895 15884900 ~ 15901689 (-) False LOC120569338
TU167219 lncRNA upstream 41607 16322485 ~ 16322657 (-) True G124346
TU167223 lncRNA upstream 64410 16345288 ~ 16357884 (-) True G124350
TU167229 lncRNA upstream 100479 16381357 ~ 16381694 (-) False LOC120570068
TU167243 lncRNA upstream 120880 16401758 ~ 16402030 (-) True G124366
TU167261 lncRNA upstream 206952 16487830 ~ 16488496 (-) True G124382
XM_039818982.1 mRNA downstream 5021 16223335 ~ 16275563 (-) True LOC120570585
XM_039818992.1 mRNA downstream 57848 16207690 ~ 16222736 (-) False LOC120570587
XM_039818991.1 mRNA downstream 57848 16207690 ~ 16222736 (-) False LOC120570587
XM_039818990.1 mRNA downstream 57848 16207690 ~ 16222736 (-) False LOC120570587
XM_039818993.1 mRNA downstream 57848 16211231 ~ 16222736 (-) True LOC120570587
XM_039817599.1 mRNA upstream 60 16280938 ~ 16285265 (-) False cd302
XM_039817600.1 mRNA upstream 60 16280938 ~ 16285019 (-) True cd302
XM_039817597.1 mRNA upstream 7361 16288239 ~ 16305884 (-) False LOC120569635
XM_039817596.1 mRNA upstream 7361 16288239 ~ 16305884 (-) False LOC120569635
XM_039817598.1 mRNA upstream 7361 16288239 ~ 16305884 (-) True LOC120569635
TU167157 other downstream 178991 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 863312 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 1286795 14984485 ~ 14993789 (-) True G123960
TU166598 other downstream 1486087 14784561 ~ 14794497 (-) True G123886
TU167228 other upstream 97731 16378609 ~ 16380765 (-) False gcgb
TU168094 other upstream 1832232 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 1832632 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 1832694 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 1875854 18156732 ~ 18163749 (-) False prkra

Expression Profile