RNA id: XM_039818294.1


Basic Information

Item Value
RNA id XM_039818294.1
length 2829
RNA type mRNA
GC content 0.43
exon number 25
gene id LOC120570068
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16381250 ~ 16389894 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAAGTTGTGCAGGCTGCAGACTTCAGGGAGGCATCTCTGTCTGCTGTCGGACTCCTCAGGAATGCAGCGGGAAGTGTGAGAAGCCTAGTTTCAACTAAAAGTAGGACGTAGCTCAGTTTTCTCATGTTGTCAACTTTAGTTTCAAGCTATTGTTACGAGTTTGTTGCTGTAAGAGTATGTTAACCAGGCTGCTTGTCCAAGAAGTCACTTTAAACTTCACATCATCGACCTTCAAGGATTATTAATATTGAAGACTGAGAGCTTCACGGCGACTTCTTCTGCATCATGGGCTGCAGCAAGGTGCTGTGGGGGGTGATAGGGGCGGCTGTCGTCATCACGTTAATAACGATCCCAGCAGTTTATTTCAGCAAATCTGATCGTGCCAAAAGGCCTTTTACCCTCGAAGATTACTTCAACAACACCATTAGGTGGAAATCCTACAATTTGTATTGGATATCAGACAAGGAGTATCTGCATAAAACAAGAGATGGGAATGTCTTCCTCCACAATGCTGAAACAAATGAGGAGTCACTATATTTGAGCAATTCAACCTTtGCTCAAGTGGATGCCACAGATTACATGTTGTCAGGTGATTATAAATACATCGCTTTTGAAAGCAATTTCACAAAGAAATGGAGACATTCATTCACAGCCTCTTACTCCATCTATGACAGGGACCGTTCAACATTTCTTATGCCTGTGAACTTTCCAACGGTTGTGCAGTACTTTGCCTTCGccccaaaaggaaacaaatatgCTTACGTTTCAGACTTTAACGTTTTCTTCAAGTCCAACGTCACTGCTGAAGCTGTACAAGTGACCCACAATGGTAAAAAGAATGAGATCCTTAATGGTGTCCCTGACTGGGTATATGAGGAGGAAGTGTTTGGATCAAACAGGGCAATATGGTGGTCATCAACTGGAAAATTCTTGGCTTATGCAGAGTTTAATGATACAGATGTTCACAAAGTGGAGTTCTCATGGTATGGAACCGAGCAGTATCCTCAAACAGTGGCTGTTCCGTACCCAAAGGCTGGATCTCCCCTTACCAAGGTGAAACTGTTTGTGGTTGATACCACAGATCCATCGCGCCCCACACAGGTGGTTGCCCCCGCTTCTGTTGCTTCTGGCGATCACATGTTGTGCTCAGTGACCTGGGTTACAGACGAACGCGTCGCTGTGCAGTGGGTCACAAGGAAACAGAATTACGTGGTTGTACAGATCTATGACTTTGATGGAAGCAGCTGGCAAGAAAAACAGAAATTTGAGCAAACAAGCAAGACAGGATGGGTCGGCCACTACGTGCCCTTACCTCTTTTCTTTGCTGATGATAAACTCAGTTTCTACAAAGTGATGAGTGACACTCAGGGCTACAAGCATATTCATTATGTGAAAGATGGCAAAGCAACACCTATTACATCTGGGAAGTGGGAAGTCATTTACATATCCAAATTAACAAAAGATTCCATCTATTTTGTGAGTAATGAGTACCAAGGAATACCCGGGAAGAGAGAGCTTTACAAGATTCTGATTGGAAGCAGCCCTTCTGCTCCTCAGTGTCTCACCTGTGGCTTGCGTAAGGACAGGTGTCAGTACAACTCTGCTTACTTCAGCTTTGACGCCTCTTACTACCGAATGGATTGCTACGgaCCTGGGCTGCCCCACTACACACTCATTGACAACAGGGGATCAGGTGCAGagctCGCTGTTCTTGAAGAGAACAAGGAACTGGAAAATATTCTGTCAGAATTCCAAATGCCAACAATGCAGTATGGGACACTTAAGGTTGCAGGATATGATCTTTGGTATCAAATGATGTTACCACCAAATTTCAAGAAGTCTAAAAAATATCCTCTTCTTATTGATGTGTATGGCGGCCCCTGTAGTCAGCAGGTGGACTATCGTTTCAAGCTGAACTGGGGCACATACCTCTCCAGTTCACACGGGATCATCATCGCTAGCTTTGACGGAAGGGGGAGTGGTTACCAGGGCGATGAAATAATGCACGCAATCTACAGGCGCCTTGGAACATTTGAAGTGGAGGATCAGATAACAGCTGTGAGGAAATTCATCGACATGGGTTTTATCGACAAAGACAGAATAGCAATTTGGGGCTGGTCATATGGTGGCTACGTCACCTCAATGGCCTTGGGTGCTGGAACTGGACTCTTCAAGTGTGGAATAGCAGTTGCCCCAGTGGCCAAGTGGGAATATTATGATGCAGTGTACACTGAACGCTACATGGGCAAGCCCACAGAGAATTCAGACTCTTACaatAATTCCACAGTGACGGCCAGGGCAAAGAACTTCAAAACAGTAGACTATCTATTGGTTCATGGCACAGCAGATGATACTATATGCACTGATGCTTGCCATTCATTTCAGTGGTACACTGACAGGGACCACAGTCTCAGAGGATCAGCTTTCCGTCATACATACACCCTCATGAGCCACTTCCTGCAGAAATGCCTCCTTAATCCCAAATAGATGTGAAGAATGTAACAGCTTTTATAGTGAACATTACCacagtaaatttttttttttatttgtgtatttttcttaCTGATATTCTGAAGTGTCAGGTTGATTTTTATGCAGCAATGGATGTTCTATTACTCGTACAAATGAgcatttgtattttatgtggATTTAGGGAACCTTTGTCAGGATATCTGACatttaattatataaaataCTAAAAGCCATTGCATGCATTTATGGTTGAATATGATGTCAAACAACAGATCAATTGCACTGCACTGATTTGTTGTGAGTGTTGTAATTTGCGTTGCAGTCATGTTCTAAAGAATAAAAATTGTTTTGAAATA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K08674 FAP; fibroblast activation protein, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167223 lncRNA downstream 23366 16345288 ~ 16357884 (-) True G124350
TU167219 lncRNA downstream 58593 16322485 ~ 16322657 (-) True G124346
TU167187 lncRNA downstream 100372 16280584 ~ 16280878 (-) True G124324
TU167167 lncRNA downstream 165773 16207699 ~ 16215477 (-) False LOC120570587
TU167158 lncRNA downstream 278895 16102156 ~ 16102355 (-) True G124304
TU167243 lncRNA upstream 11864 16401758 ~ 16402030 (-) True G124366
TU167261 lncRNA upstream 97936 16487830 ~ 16488496 (-) True G124382
XR_005640965.1 lncRNA upstream 232049 16621943 ~ 16622411 (-) True LOC120569756
TU167376 lncRNA upstream 373761 16763655 ~ 16776734 (-) True G124463
TU167428 lncRNA upstream 493540 16883434 ~ 16884174 (-) True G124503
XM_039818445.1 mRNA downstream 600 16378488 ~ 16380650 (-) True gcgb
XM_039817597.1 mRNA downstream 75366 16288239 ~ 16305884 (-) False LOC120569635
XM_039817596.1 mRNA downstream 75366 16288239 ~ 16305884 (-) False LOC120569635
XM_039817598.1 mRNA downstream 75366 16288239 ~ 16305884 (-) True LOC120569635
XM_039817599.1 mRNA downstream 95985 16280938 ~ 16285265 (-) False cd302
XM_039818444.1 mRNA upstream 147 16390041 ~ 16401166 (-) False ifih1
XM_039818443.1 mRNA upstream 147 16390041 ~ 16401166 (-) True ifih1
XM_039818467.1 mRNA upstream 13668 16403562 ~ 16443170 (-) True LOC120570230
XM_039818296.1 mRNA upstream 102468 16492362 ~ 16515624 (-) True fign
XM_039818447.1 mRNA upstream 172848 16562742 ~ 16596820 (-) True grb14
TU167228 other downstream 485 16378609 ~ 16380765 (-) False gcgb
TU167157 other downstream 279657 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 963978 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 1387461 14984485 ~ 14993789 (-) True G123960
TU166598 other downstream 1586753 14784561 ~ 14794497 (-) True G123886
TU168094 other upstream 1723216 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 1723616 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 1723678 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 1766838 18156732 ~ 18163749 (-) False prkra
TU168240 other upstream 2305586 18695480 ~ 18699802 (-) True G125089

Expression Profile