RNA id: TU167466


Basic Information

Item Value
RNA id TU167466
length 487
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G124539
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16910171 ~ 16931466 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtccatatcCACTGTGCTATAATAACATGTGCACTGAATTTTGTTTGTGATGGTTTACATTTCACAAACAAAACCCTGTTCACCTCCATTGTGCTGGGTTGTAGCAGTGGAGATAAAACCAAGCCTAAATGCATAGTTTAACACCACAAAAGACTGTCGTTGAAGGACTCCACTCCGTACTTGGACACGCAGTACGGTCCGCCGAACGGGGTGACTCGCCCAAACACACTGGCGACGTTCACCACTCTGCCTCTGGCCTTCTTGATGAGAGGGAGGACGCTCAGTGTTACGTCGATTACACCGCACAGATTGACAGCTATCATGTCCTTGTAGTCGTCTATAGTGAGCCAGTCAGTGGGACCAGAAGGCAGAGCGACTCCAGCATTGTTCACCACGGCCCACAGGCCTGAAGCAACACAACAAGATAATAAACACAAGGAGATGAGTACCCACTTGCATGGCACCACCTAGAAATGAAATATCTgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167465 lncRNA downstream 637 16910171 ~ 16924563 (-) False G124539
TU167428 lncRNA downstream 41026 16883434 ~ 16884174 (-) True G124503
TU167376 lncRNA downstream 148466 16763655 ~ 16776734 (-) True G124463
XR_005640965.1 lncRNA downstream 302789 16621943 ~ 16622411 (-) True LOC120569756
TU167261 lncRNA downstream 436704 16487830 ~ 16488496 (-) True G124382
TU167505 lncRNA upstream 94868 17026334 ~ 17027190 (-) True G124561
TU167536 lncRNA upstream 108727 17040193 ~ 17041018 (-) False fastkd1
TU167537 lncRNA upstream 108727 17040193 ~ 17041018 (-) False fastkd1
TU167538 lncRNA upstream 108727 17040193 ~ 17041018 (-) False fastkd1
TU167539 lncRNA upstream 108727 17040193 ~ 17042372 (-) False fastkd1
XM_039818665.1 mRNA downstream 20060 16895676 ~ 16905140 (-) True abcb11a
XM_039818674.1 mRNA downstream 33526 16887828 ~ 16891674 (-) True spc25
XM_039818118.1 mRNA downstream 62974 16833693 ~ 16862226 (-) False stk39
XM_039818662.1 mRNA upstream 6784 16938250 ~ 16976167 (-) True lrp2a
XM_039818663.1 mRNA upstream 6784 16938250 ~ 16976167 (-) False lrp2a
XM_039818297.1 mRNA upstream 42839 16974305 ~ 16985139 (-) True LOC120570071
XM_039817651.1 mRNA upstream 103907 17035373 ~ 17040939 (-) True fastkd1
XM_039817654.1 mRNA upstream 118458 17049924 ~ 17058311 (-) False ccdc173
TU167228 other downstream 544435 16378609 ~ 16380765 (-) False gcgb
TU167157 other downstream 823607 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 1507928 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 1931411 14984485 ~ 14993789 (-) True G123960
TU166600 other downstream 2135294 14784561 ~ 14789906 (-) False G123886
TU168094 other upstream 1181644 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 1182044 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 1182106 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 1225266 18156732 ~ 18163749 (-) False prkra
TU168240 other upstream 1764014 18695480 ~ 18699802 (-) True G125089

Expression Profile