RNA id: TU167666


Basic Information

Item Value
RNA id TU167666
length 1488
lncRNA type read_through
GC content 0.40
exon number 2
gene id G124673
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17248369 ~ 17338260 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgaaatgtggcaaaaggtcgaaacgttcaagggggccgaatactttcgcaaggcactCTAGTTGACCTAGCTCCCAACGCTTGCTGCCAAAGCTGATTGAGAGAGACTGATTTTGACTGTAGCTGTAGGATGACGTAACCTGGGCCGTTACCACCACAGCCAGGCAGTATACTGTTGGAGCTCGACCTTATTGAAAGTAGAAATTAGCAATTATATCTCCTATTTGTAGAATCTGCATATTTCCCTGTGTTAGAACTGGACAAGACCAACACACAACAGTTCCTGTAAATCAGAAGGGCTGCAGAAAATATTGAAAGGGGCTGCAAAAGTAGTTCAGGAAATATAATTCCCATTGTGACCCTTCAAGGGCTCTGTGGTAGTTTAGTCACTGAAAATAATGCAAAGATACTGACGTGCACACTTACAGTATAAGTAACTGGTTTTccacacatttttatatttttagtttttgagccaagctaaaaaaaaaaggcattattTTTGAGTTatgaactattttcttttttaaattgttcagAATATTTGAACTCTGCTGAGAGGTTTTAATGTTTCTTGTAATTTTCCTTCTACTGCTATCAACGAgctgctttaaagtgctcatattatgctttttggatttttcccttttctttattgtgttatatatctttttttttgtgcacgttataggtgtacaaagtgaaaaagtccaaagtccaccccaaagggacttagcatctccaacagaaaacactgttcacaaactacTCCTAACAGCTCTATTGtggtccagcctttacttctgttagaagtgagatgcctcattctgtagctaaaacagagagctcaacacacagggtgaaaagaggagctgtagcaatgtgtagtacaacaaaaatatggtgttttttgaaaattaaaccatgtaaacctattctgatataacatctaaatacaattatgaacctgaaaattagcataatgagcactttaagatgcagtactgctgctgctggacacACATTCACGCTTCGTGTGAGAAGGCCAGCACAAGGTTTCAGTATCCTCGAAATACTGAAGCTTGTACAACAATCGTAATCGTGTGTAGGAGCAATTTGTCAACTGAGTGGTGCAGCTAATAGACCATCTATATTTTGTTGAGACTTGAGAGTATACTGACCACCTTAAACAGTGCTCTCTGCTAAGACGAGTCTGCAGTCATTGTGATATTTATTGATTCAGAGGCCACTGATGATGGGATAGGGGTTCTCGTCAGTAAACTGTTCATTTGGATAGTGGAGAAGGGATATGTTGTATCCAGTGTAACAACAGGAGCTGCATAAGTAGTGACTGGGGGAAGAACAAAGTCAGACGGAGGCAGAGTTAGACCAGGGACCACACCTGGCTGGGTGAGCGGTGGAAGACCTGTGGAGCACAACAGAAACTGTTACCTACTACTGCATAGGGGACTTTGAAGTCATTAACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167672 lncRNA downstream 18253 17227899 ~ 17230116 (-) True G124679
TU167579 lncRNA downstream 68271 17176156 ~ 17180098 (-) True G124612
TU167573 lncRNA downstream 120825 17124881 ~ 17127544 (-) True G124606
TU167568 lncRNA downstream 149341 17094443 ~ 17099028 (-) True G124601
TU167546 lncRNA downstream 182832 17062706 ~ 17065537 (-) True G124590
TU167694 lncRNA upstream 9651 17347911 ~ 17350746 (-) True G124691
XR_005640878.1 lncRNA upstream 399024 17737284 ~ 17822487 (-) False LOC120569506
XR_005640876.1 lncRNA upstream 399024 17737284 ~ 17822487 (-) False LOC120569506
XR_005640877.1 lncRNA upstream 399024 17737284 ~ 17822487 (-) True LOC120569506
TU167930 lncRNA upstream 684149 18022409 ~ 18023477 (-) True G124872
XM_039818482.1 mRNA downstream 170244 17074358 ~ 17078125 (-) False mettl5
XM_039818480.1 mRNA downstream 170244 17074374 ~ 17078125 (-) False mettl5
XM_039818481.1 mRNA downstream 170245 17075882 ~ 17078124 (-) True mettl5
XM_039817656.1 mRNA downstream 193924 17049924 ~ 17054445 (-) False ccdc173
XM_039818549.1 mRNA upstream 46503 17384763 ~ 17386999 (-) True dlx2a
XM_039819086.1 mRNA upstream 83607 17421867 ~ 17424329 (-) True nup62l
XM_039819082.1 mRNA upstream 94330 17432590 ~ 17457470 (-) False ppp1r9ala
XM_039819080.1 mRNA upstream 94330 17432590 ~ 17457470 (-) True ppp1r9ala
XM_039819079.1 mRNA upstream 95399 17433659 ~ 17458368 (-) False ppp1r9ala
TU167228 other downstream 867604 16378609 ~ 16380765 (-) False gcgb
TU167157 other downstream 1146776 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 1831097 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 2254580 14984485 ~ 14993789 (-) True G123960
TU166600 other downstream 2458463 14784561 ~ 14789906 (-) False G123886
TU168094 other upstream 774850 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 775250 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 775312 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 818472 18156732 ~ 18163749 (-) False prkra
TU168240 other upstream 1357220 18695480 ~ 18699802 (-) True G125089

Expression Profile