RNA id: TU167860


Basic Information

Item Value
RNA id TU167860
length 2750
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G124816
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17730056 ~ 17733251 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTAAAAAGCTCAATTAAATCTAGATTTATTTAATGTCATTTACAAAAGCAAGCACTCACTTGCTGCCTAATTACAGTACTATAACATAACTGCATCTGTACCAATAATTCATGAAGGTGGACCCCAAAAAGCTTGCATGTGATGTGCTGAGAAAACAAGGCGGATTCATGGCAAGTCTAAGCAGCTGCTTCTCAGAAAAGATGACATTCAAGAAAGATTTTTTGCTAGCATGATTATCCAGACAAAAGTTACTGCCATTGTTAAATAGTCAAATACATGTATTTTAATCACGTAATTTCTTACATTTGTACAATACATGCTTTGTGTATTTCGACAGTGTCTGAAAGACTTgaaaatgtacatttccatGACGCCTACACGGAACAATTTTGGTAGCCACAATAAAATATGTAGTCACATCTGTAATGAAAGTGTTGTATGACAGCAGAGTTTTACATAGCAAACAGGATAAGGAAAGCAACCATCAAACAGAACAGTCCCATGGCTTCAGACAGGGCAAATCCCAGGATGGCATATGAGAACAGCTGCTGCTTCAGAGATGGGTTCCTGCAAACAAGAACAAACCACTTCAATGcatcaatgaaaaaaaacaaagcatgcaCCAGAAATctattaatcaaattttaatatTCTCAGGATGTATACATGCAGCAACAAACCTAGCATAGCCGATAATGAGACTGCCAAACACAGTCCCAATTCCAGCTCCGGATCCAGCTACTCCGACTGTGGCAGCTCCAGCTCCAATGAACTTGGCAGCGGTGTCAATGTCCCTGCTGATGGCGCTGGTCTGGAAGCCCCTCAGTGTGACCTCGGTGAGGGGGCTCTGTGGAATCACAGCAAGCACAGAGGCAGAGAGGGGTCTGTAAAGAGCCCGGGAACCAGCACGGACCTGAAGTAAAGATACAAAAAGCCGTACAAATTTAGTTATACAAGCTCAATAAgccataaaacatgtttttagctATTCCCAGTCTGAGCAGGCAGGAGGCACCTTGAATGTCACTTTGTCAATCACAGTGTCATTCACTGCAGTGCAAACACTTATGACCTGTGGCCTTTAATGATTTGAGTATAGTCTGTGCTGTCAAAGTCACTCCTGGTTAGTTTGAAGTCTTTATATGTGGTGCTGGCAAACTACAATAAACATTGATGGCAAGCCTAACAAATTGTCCTATTGTAATTCAAACTTGTTAACCTGCTAGAGCTAgtagaaacagaaatatgacCTTGGAGAAGGACTAACAACACAGGCTACATATATTTGGGAACAAACAATGCGCAAATACACAAAGTGATAGTTTGTGCATCAATTGCACAGCCCTGTTTATGAGTTTGCAGCCGAACAATGCACTATATTCGGCTAACAGAGGCAGTAATGACCTTAGCTAACGGCCATTACTTAACATGTCCGCTACAAACGAAAGCAAAGGCAGTGGCAGTCTTTTGAACATAACATGCATGCACATTATTCATGAATATTATGACTACATTGTCACcttttaaaaagcctttctgTCATTCTGTGCTTTAGCATTAGCGATCTAGCCTGTTGGCCTAGACTGCATATAATACCCTTGCCAGTCTGCTACAGTCAAGTTCAACCAGAGGCCCACCAGATTTAATCGTGATATTAAGAAAGCAAGACTCAAACTTGCAGGATAAAAACATCGAATAAAGCAAACTCACCAGAGCCGGCGTGGAGACGAACTTTGCACAGGCGTACATTTTCTACTTTAGGTAATGTTAACCGGTTCGGTCAAATCTGGTTGAAGCCCGGGTCTCTCTAAGGAGGAAGACCGGAGAAAAGTAAGGTCAAACGGGTGTAAAAACGCTCCACAAAGAAAATAAAGCCATTCATATGTACATTCACATCCATTCTGCATGCTATTCTCACTTGTGCGCTGCAATGTGAAGTTAAGAGAGAGGATGAAAAGGGATTTATAAAGACAGACTTCTCATTCAAACTGCCATTACCCACTTACCGACTGCAGAGGTCGAACCACAGTGAAAAAGTGCGCATGCGCGATGTGACGTATGTAGAGGCCCGGATGATGACAGTGGAAGGTCATTtcacaaaactttatttaaaaacacgTTGTTTCAGTCAGTGTAATCCTTATTCCGGTCATACATCCATGGTGTAAACAGTAAACACCATATCAGATAACTTCAATGTACAGCCAGAACAAGCCAATACAGGATATACAAATGTGATATTGTCagaaagtgttgaaaaagattatttttccaACTTTAAAGCTACATCAAGGGGAAACTAAAAGGGAACGTGGATTTTAATGGGTTatttgatatttatttaaagttgCATTCACCATAAGAAGTAGTAAGTTTGGGGTGAATGCAATGACAACAGACTTCTGGGGAAGCTTGTAACAGTTTAGTTGCATTTGTTTCTGTATGCATATGATGGGTCATAAAATAGGCCTATATAACCCAGGCTACCtctaaaataaacattataaagaTATGTCTGATTATTATTAAACTGTTATTGTACGATTTTTGTAGAAAGACGGGGTAAAATCTATTTGTAAAGTTGTCACAGTTACTATTAAGATAATCCATTCTTAGTAGACCATGACTCAATGGGAACGAGGGTCTATTCCAAGGATGGAAATATTTGGCTGTAACATTGCTGCGGGTCAAACCAGGAAAtattgtggccgggttggctcagtggtagagcaggtgcacatatactgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167839 lncRNA upstream 42242 17687571 ~ 17687814 (+) True G124804
TU167831 lncRNA upstream 55601 17672255 ~ 17674455 (+) True G124797
TU167828 lncRNA upstream 63981 17664672 ~ 17666075 (+) True G124794
XR_005640894.1 lncRNA upstream 115989 17605145 ~ 17614067 (+) True LOC120569550
TU167662 lncRNA upstream 231297 17469748 ~ 17498759 (+) True G124671
TU167865 lncRNA downstream 2859 17736110 ~ 17736986 (+) True G124819
TU167881 lncRNA downstream 100968 17834219 ~ 17836226 (+) True G124834
TU167890 lncRNA downstream 127502 17860753 ~ 17870122 (+) True G124841
TU167891 lncRNA downstream 127502 17860753 ~ 17881505 (+) False G124841
TU167958 lncRNA downstream 355974 18089225 ~ 18089543 (+) True G124895
XM_039817416.1 mRNA upstream 81804 17643338 ~ 17648252 (+) False scrn3
XM_039818000.1 mRNA downstream 134611 17867862 ~ 17870159 (+) True hoxd12a
XM_039817999.1 mRNA downstream 140431 17873682 ~ 17878153 (+) True hoxd11a
XM_039817998.1 mRNA downstream 145859 17879110 ~ 17881328 (+) True hoxd10a
XM_039818001.1 mRNA downstream 149215 17882466 ~ 17884616 (+) True hoxd9a
XM_039818004.1 mRNA downstream 162761 17896012 ~ 17899698 (+) True hoxd4a
XR_005641003.1 other upstream 552416 17127881 ~ 17177640 (+) False myo3b
TU167490 other upstream 730524 16997781 ~ 16999532 (+) False col28a2a
TU167128 other upstream 1628445 16099271 ~ 16101611 (+) False dap1b
XR_005640926.1 other upstream 2574170 15138477 ~ 15155886 (+) False trpm2
TU166397 other upstream 3495986 14233332 ~ 14234070 (+) True G123742
XR_005640989.1 other downstream 126909 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other downstream 127502 17860753 ~ 17880726 (+) False hoxd10a
XR_005640988.1 other downstream 127621 17860872 ~ 17880726 (+) False hoxd10a
XR_005640963.1 other downstream 277506 18010757 ~ 18017413 (+) False hnrnpa3
TU168229 other downstream 969777 18703028 ~ 18704528 (+) True G125079

Expression Profile