RNA id: TU167891


Basic Information

Item Value
RNA id TU167891
length 1312
lncRNA type read_through
GC content 0.41
exon number 3
gene id G124841
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17860753 ~ 17881505 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCAGAGTCAAAGAGATACCAATCAATTCGTGTGAACatacccacacagtcctgagaAGAGGTCTAATTAGCTTAATGATTAAAATCATCTGCGTGTTTACCAAGGGTGTGCAGTgcctttttaatatttatttggtAGAACTATAGCTTTCAAAGACATCAGCAGACagtttgacttgtcatagcagcaAAAGCAAAgttgttactaataacattacatgGCTCTGTTCAATACAAGTGTCCATGTTAGCAGCGGAATCTGAAGCAGTACCAGGCTCCGGTGGCCATTAGAGGAACTGCAACTCAAGGCACATGGTGGCTGCACTTACACTGCACAGGGCTGCATGGAGGGCCCCGGACAATAGGAGCTCACCTCTCTGAAGGCCTCCCTTTGACATGGGACCCCTACATGCTCCCTAAAAGACTGCACGCCGACAAGCAACTGGTTAACTGCAAAAAgtgggagaaagaaaagatgTCCCTACACAAAGCACCAGACCTTGGAGTTGGAGAAGGAGTTTCTCTTCAATATGTATCTGACCCGAGAGCGCCGCCTAGAGATCAGCAGGGGCGTCAACCTGACCGACAGGCAGGTCAAGATCTGGTTTCAGAACCGCAGGATGAAACTGAAGAAAATGAACAGAGAAAACCGCATCCGTGAACTGACCTCAAATCTCACCTTTTCGTGagcgtgcatgtgtctgtggttagctgtcttttattttctctcatcttCAGTTTGATGCTTTATTGGCATTGGACGTGTATCTTCAATTTCAACGAAACTgtgactatatactgtataagccAATTTTAGTACTTTGTGTGGCGTcgtgtatttgttttatttgatcaGGGTAACACTTTTTGGTCTTAAATTATTGGAAAAGTAGATTTCCTCCCTGTAGCCTGTAGACATGGATATTCTATTGTGTCACGATGGCGAGAGCTGGAAAAGAGTTAATCATATTTTCATTCATGAAAGCACATTTCTTGTCACGTAGTGCAacatttgttttacagtaaGTGCAAGCCATTTGCTCAACCGTGTAATGTTTCTATGGCTGAAAACGATGTTAATCTGTGAATTGATTGCATGTTTGTGGCATGTATCTTAATAAATTATCAAATaatattgttttgtgtttgataTGCTCTAAAAGTCTCTGGTCTACACTTATTTGTTATTAGTGACTAGGCCTACATCACCGTGGAAATCTTCGGTATTATTTGCATCCACGCAGGCATTAGTTTGCATAAAACGGTTatgaagagaggaaaaagaaaaaataggtTACATGTTCTTAACGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167881 lncRNA upstream 24527 17834219 ~ 17836226 (+) True G124834
TU167865 lncRNA upstream 123767 17736110 ~ 17736986 (+) True G124819
TU167860 lncRNA upstream 127502 17730056 ~ 17733251 (+) True G124816
TU167861 lncRNA upstream 127502 17730056 ~ 17733251 (+) False G124816
TU167839 lncRNA upstream 172939 17687571 ~ 17687814 (+) True G124804
TU167958 lncRNA downstream 207720 18089225 ~ 18089543 (+) True G124895
TU167968 lncRNA downstream 247746 18129251 ~ 18182236 (+) True G124901
TU167981 lncRNA downstream 305913 18187418 ~ 18188518 (+) True G124914
TU167982 lncRNA downstream 307335 18188840 ~ 18189132 (+) True G124915
TU167992 lncRNA downstream 352537 18234042 ~ 18297620 (+) True G124924
XM_039817416.1 mRNA upstream 212501 17643338 ~ 17648252 (+) False scrn3
XM_039818001.1 mRNA downstream 961 17882466 ~ 17884616 (+) True hoxd9a
XM_039818004.1 mRNA downstream 14507 17896012 ~ 17899698 (+) True hoxd4a
XM_039818002.1 mRNA downstream 19574 17901079 ~ 17909596 (+) True hoxd3a
XM_039818003.1 mRNA downstream 19574 17901079 ~ 17909596 (+) False hoxd3a
XM_039817799.1 mRNA downstream 129252 18010757 ~ 18017413 (+) True hnrnpa3
XR_005641003.1 other upstream 683113 17127881 ~ 17177640 (+) False myo3b
TU167490 other upstream 861221 16997781 ~ 16999532 (+) False col28a2a
TU167128 other upstream 1759142 16099271 ~ 16101611 (+) False dap1b
XR_005640926.1 other upstream 2704867 15138477 ~ 15155886 (+) False trpm2
TU166397 other upstream 3626683 14233332 ~ 14234070 (+) True G123742
XR_005640963.1 other downstream 129252 18010757 ~ 18017413 (+) False hnrnpa3
TU168229 other downstream 821523 18703028 ~ 18704528 (+) True G125079
XR_005640959.1 other downstream 2293323 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other downstream 2293323 20174828 ~ 20265148 (+) False myo16
TU168970 other downstream 2610673 20492178 ~ 20521274 (+) False G125627

Expression Profile