RNA id: TU167930


Basic Information

Item Value
RNA id TU167930
length 1047
lncRNA type intronic
GC content 0.36
exon number 2
gene id G124872
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18022409 ~ 18023477 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTCACTCTGTGCGTATGGTTCATAGTAGGCAGCCTTAGTGACGTGTAATCCTTCAGTGGTCATGCTTCTGATGCAACATTGAGTCAAAGAGGGTTAGTGGgtcctttttttttgcagtgccACAGCTGtagtcagaaaaaaacaatgttttagaatatatatataggtgcTTGTTTgctattattattgtttaaaacatatttgtttttgtatttattgtttatttactttgaatatgtttatgtatgcaacATCCACCAAAGCAAATTCTTTGTATGTGTTACTTATTCTGACGAGTTTATGGATATTTACCACACACCCCATTTTctttgaataaaaaacaaagtagAAAACATTCTTATACAGTATCTTCTCCTCAGCTTCACATCCTCTTTATTCTTCTTTCCCTCTTGGCTTTCTCCTGGCTATGTGTGTTTTGGCCTTATGACCGACTGCAAGCATTAAGAAGCCTTTCCCATAAGTTCTGTTTATGCACATATCTGAGGAACAAACAAGTCACATGCCCAGACAAGTTTCTTGTGAACCAGTGTCTTGGGTTTATGCAACATCCCTGGGCCTTGTGAAATGGTTTCCTTCTGTAaatcatttctgtgtaaaagacCCAAGGAAGAGGGCAGCACAGTTTATCTTTAGAcattcttgtttaaaaagaaaaataacattcaGCCTGTAAGGAAATCTACAGGAAACTGTATTAAACTATCCTCACAGTTGCTAGTACGCTCTTTCTAACATTCTGTATTGTCAGCAGCACTTaacttaatatataaataagaaaTATAGTACAAAATAATTTGTGCAGTGATGGGACAGAACACGCAGAGGTCAGTTATCAATAGTTGTAGTTATTTACTTGAAGACATAACAGGAAGGAAAACAACGAAACAAGGTCTGCAGTTCCACCCAGCAACACATCTACAGCCAAATATACCCTCTTTTATTTGGTTATAACACCCTTTAAGGAATATTACTGTTATATCATGTGAAAAGGATATTCTACAAGCACCGTGgtaccatttaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640878.1 lncRNA downstream 199922 17737284 ~ 17822487 (-) False LOC120569506
XR_005640876.1 lncRNA downstream 199922 17737284 ~ 17822487 (-) False LOC120569506
XR_005640877.1 lncRNA downstream 199922 17737284 ~ 17822487 (-) True LOC120569506
TU167694 lncRNA downstream 671663 17347911 ~ 17350746 (-) True G124691
TU167666 lncRNA downstream 684149 17248369 ~ 17338260 (-) True G124673
TU168090 lncRNA upstream 68850 18092327 ~ 18092530 (-) True G125000
XR_005640987.1 lncRNA upstream 185261 18208738 ~ 18211956 (-) True LOC120569840
TU168246 lncRNA upstream 677410 18700887 ~ 18702962 (-) False G125090
TU168251 lncRNA upstream 677410 18700887 ~ 18702696 (-) False G125090
TU168245 lncRNA upstream 678255 18701732 ~ 18702696 (-) False G125090
XM_039817997.1 mRNA downstream 165357 17852869 ~ 17857052 (-) True evx2
XM_039817996.1 mRNA downstream 186323 17827078 ~ 17836086 (-) True lnpa
XM_039818977.1 mRNA downstream 289817 17730065 ~ 17732592 (-) False atp5mc3a
XM_039818978.1 mRNA downstream 289871 17730065 ~ 17732538 (-) True atp5mc3a
XM_039818527.1 mRNA downstream 293070 17712254 ~ 17729339 (-) False atf2
XM_039818618.1 mRNA upstream 42541 18066018 ~ 18112342 (-) True pde11a
XM_039817109.1 mRNA upstream 90038 18113515 ~ 18115097 (-) False LOC120569287
XM_039817111.1 mRNA upstream 90038 18113515 ~ 18115092 (-) False LOC120569287
XM_039817110.1 mRNA upstream 90038 18113515 ~ 18115086 (-) False LOC120569287
XM_039817769.1 mRNA upstream 133255 18156732 ~ 18163749 (-) True prkra
TU167228 other downstream 1641644 16378609 ~ 16380765 (-) False gcgb
TU167157 other downstream 1920816 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 2605137 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 3028620 14984485 ~ 14993789 (-) True G123960
TU166600 other downstream 3232503 14784561 ~ 14789906 (-) False G123886
TU168094 other upstream 89633 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 90033 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 90095 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 133255 18156732 ~ 18163749 (-) False prkra
TU168240 other upstream 672003 18695480 ~ 18699802 (-) True G125089

Expression Profile