RNA id: XM_039817111.1


Basic Information

Item Value
RNA id XM_039817111.1
length 816
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC120569287
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18113110 ~ 18115097 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGATGACGTTACAGCGGGAGTAACATCACGGAGAGGAAGCACGTTTGGGAATCACTTGCGACCGAGCCGAAACCATGCCTGCAGACattgaaaaaggcaaaaaggcATTTGTCCAGAAGTGTGCCCAGTGCCATACTGTGGAGAATGGAGGAAAGCACAAGGTTGGGCCTAACCTTTGGGGTCTGTTTGGACGCAAAACAGGCCAGGCAGAGGGCTTCTCCTATACTGATGCAAACAAAAGCAAAGGCATTGTCTGGAATGAAGACACCCTGATGATTTATTTGGAGAACCCCAAGAAATACATTCCAGGAACAAAGATGATCTTCGCTGGCatcaaaaaaaagaatgaacgAGCTGACCTTATAGCATATCTGAAGTCTGCAACTTCATAAAGAACTCATCTGTGCATCTTTGCCAGTTTGTGTCCTGACAAACCGATGAAAACGCCAGGACTCGTTCTTTCAAAATCAGGCATAATGGCAAGCAATCTCTGACTGGTATTGACATAAGTTACCATTTTTGTTACAGCTCTACCTCTACGGTTTCTTAAATGATCCTCCTTTGTGATGGACTAAAATGGTATCCCCTggttttaacaatttttttttttttttttttttttaaataaattattaaaccatatattgtgtgtatatataatgtagGGCCAGAAagctgtttgtttattgtcaTCCAGAATGATGATTAACTTTCAAGAATGAATATACCTTTGCTTCCAATTTTAATGATACCTCAacagtcttttattttgtcatatttgaatTTGCAAGTTGAATAAAGTTGACACTAAATGTT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0070469 respirasome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005506 iron ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168090 lncRNA downstream 20985 18092327 ~ 18092530 (-) True G125000
TU167930 lncRNA downstream 90038 18022409 ~ 18023477 (-) True G124872
XR_005640878.1 lncRNA downstream 291028 17737284 ~ 17822487 (-) False LOC120569506
XR_005640987.1 lncRNA upstream 93646 18208738 ~ 18211956 (-) True LOC120569840
TU168246 lncRNA upstream 585795 18700887 ~ 18702962 (-) False G125090
TU168251 lncRNA upstream 585795 18700887 ~ 18702696 (-) False G125090
TU168245 lncRNA upstream 586640 18701732 ~ 18702696 (-) False G125090
XR_005641073.1 lncRNA upstream 700754 18815846 ~ 18819321 (-) True LOC120570508
XM_039818618.1 mRNA downstream 1173 18066018 ~ 18112342 (-) True pde11a
XM_039817797.1 mRNA downstream 88307 18018079 ~ 18025208 (-) True nfe2l2a
XM_039817997.1 mRNA downstream 256463 17852869 ~ 17857052 (-) True evx2
XM_039817996.1 mRNA downstream 277429 17827078 ~ 17836086 (-) True lnpa
XM_039818978.1 mRNA downstream 380977 17730065 ~ 17732538 (-) True atp5mc3a
XM_039817769.1 mRNA upstream 41640 18156732 ~ 18163749 (-) True prkra
XM_039817770.1 mRNA upstream 49091 18164183 ~ 18171021 (-) True casp10
XM_039817771.1 mRNA upstream 56838 18171930 ~ 18174973 (-) True LOC120569736
XM_039817966.1 mRNA upstream 65337 18180429 ~ 18225611 (-) False LOC120569835
XM_039817962.1 mRNA upstream 65337 18180429 ~ 18225611 (-) True LOC120569835
TU167228 other downstream 1732750 16378609 ~ 16380765 (-) False gcgb
TU167157 other downstream 2011922 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 2696243 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 3119726 14984485 ~ 14993789 (-) True G123960
TU166600 other downstream 3323609 14784561 ~ 14789906 (-) False G123886
XR_005640956.1 other upstream 41640 18156732 ~ 18163749 (-) False prkra
TU168240 other upstream 580388 18695480 ~ 18699802 (-) True G125089
TU168241 other upstream 580388 18695480 ~ 18696368 (-) False G125089
TU168243 other upstream 586556 18701648 ~ 18704552 (-) True G125090
TU168242 other upstream 588003 18703095 ~ 18704677 (-) False G125090

Expression Profile