RNA id: TU168243


Basic Information

Item Value
RNA id TU168243
length 2905
RNA type TUCP
GC content 0.42
exon number 1
gene id G125090
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18700887 ~ 18704677 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcaaaatagctatttttaaaacactaagggccctattttaacgatctgaaacgcaagtatgaaacgcaaaacgcaagtagctttgtgggcggatctcgggcgctgttgctattataccggcgggataaatgagtcttgcgcccgatgcAAATCtgaaatgggttggtctgaagtagctaggtgtggtttgggcataacgtgaaaataaccaatcagagcgtcatctcacattccctttaagagcaggcgcgcttgttccatggcggatagCTATTaggacggcggatttgcctggcgcacgccagcgggagctgtccgggatgcggcaaagtaataaatgcctgtcttggccgggtggcgatgttgctgcggccactcgggcgcatctcctcaagtctggagaggattgctgcagccatggagcatgggcctccaaacgcaccacttgctcctgttgtgccccttcctcttccccccactccatctccgtccacccgctccatcaggagcgcatcgcgcattactcccggaccagattccgccggagtgtccaatcccaccgtagttcaacatcacgtctccttaattcctctaatatttcctcatttatgtcatcaacacatccatgattcatggaaatgttgtgtaaaacacaacaagccacaaagaatgccccgcctttttgaggactgtactgtaaagtgcctcctgatctatccaaacacctgaagcgcattttcagtaatatttttctttgtaattatgtatggtttgcaaaaatgggaactgctgcgtccgtttacATGAGAGAAGTGTGTGCgcattgtgcacacgctacattatggccaagcatgcgcccctaaaatagcatatgaataacgcgctactgacttaagactagcgccactgactttagaccaggtttttcctggtcagtggcggaattgtttagcaaaatagcaccaggtaacgtttgcgccggaacacgcctcctcttttcgctgaaccgcccctgggagcacaaatacattccctaatttaccgacatgCATCTGTGGAgagaaaagtccgctgtgcgtcgggtgcaaaataggaatgatacatgtgtcggtgtaaaaaggcaattgcgctgagtgcaagatagggccctaagaaggctcgacacaacatgaaacttttttcgaagtatcaccaggggctctacaccttaactacaccggtgcaCAAGGGATATACTAAATATGTGGCTACTTGTTTtgatatcgactcgttttgactgccgaggtggtagcggcctaaaacaacaagagctacggtgagttagtgttgttcaaaacctttcttttaagtaaactctgggtacacaaacaatgttctcaacgctttcgttaaggtgtagagcccctgctgatacttcgagcaaagtttcatgtcgtgtcaagccttcttagtgttttaaaaatagctattttgaggctagcataaaagtgcccctatcactcccattcaaaaggccatttgaccgaaaaacgagaatacggtaaatcttaaaagtgacgcttccgtcctaaatatgcttttaaatgaaagtctgattcgggtacattcacaaaaggatcctaggttgcattttggcgagagttacgctttaatcaGAGGGCTAAATTAAAATCCTCACTTATAGATAATTATTGatcaataatacatttattgtttttatcagTAGGGCTTCATGTCTCCCTTAAGTGAGAAGTCACTCAGCTTCCACTTTACCACTTTATAGCAAAAGTGACCTGCATGCAAAGCCACTTAATAAAGAGATTTTCAAAAATACacaatttttaaaatatattaataatgtTCTTAAACATACTCTGCTAACATTATAAAGCCTTATAAAGGCACAGTGAGTAAAAATCATGCATATGTGTGAATGGACATTGCTGTATAAAAAGCACACCCGTTCAATACAGAATCACCATCACAGACGGGAGTATTCTGCTGCTGTAATCTTTATATTCATTTACAGTAATTGGGGCCTATAACATTTGCTTCTGCATCCTCGGAATAGTCTATACGTTTTACACGTGATTTCGGGATTTGCATATGCaggaacaaaaaaaagttgCCACTTCTGCATATGTGATTGAATAGCAAAAGCTTATCCTGTAACAGCGTTTACAGTTTGGGTAAAATAGCCATATGCATTGTGTTTGTAAAGCTAGTAAAACTAAAATACTGTCAGACAGTAGTAAAAAGTTAAGTGTTGCTATTACTCCAAATATATTACCACCTTTGTTTAAAAGGTGAGTAAATTATTAAGAGAATACATAGCAAACAGCACACAGTGCTTACTGGAAATGCAAAGAAAGGGGCCCTAAATGTATCTGTAAAGCTTGAATGGTTATGTCTGCAGCACAGACTGGCTGGAAGCCGACCACAGTCACCTGTGAAATGAGAATCTGTGGAGAACGGACAGGCCTGAATGCTTCAGTGAAGCTCCTCAGTAGAGCGTACTTACAGAGAATGTGAGAGGCCTGGCACTGCTAAGGGGGGCGGACAAAACCAGCCTGTATGTACGTCCACTGTTCTCTGAGAGCCCATCAGCTCCATAACCACCAGGCCAGCTAAGCTTACATATCCAAGGAATTAACCAGTGTTATGCCCTTCCTTCGCAGTATATCAGTGAATATTTGTTGAGCTTTTCTTTATTGCATTTAAGTCAGTGTTTGCATCCACATCGCAAGAACAAAAATACAGAGAAAATATGTCAAATGCGTCATTTAAAAGGATTCTTTATTATGAATATTAATTTTACAGGATgccctttttatgttttgtatcaTTGAACTTTTAATGGTAATATTTTtgcaataaaatattttaaaaaatggatGTCTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640987.1 lncRNA downstream 489692 18208738 ~ 18211956 (-) True LOC120569840
TU168090 lncRNA downstream 609118 18092327 ~ 18092530 (-) True G125000
TU167930 lncRNA downstream 678171 18022409 ~ 18023477 (-) True G124872
XR_005640876.1 lncRNA downstream 879161 17737284 ~ 17822487 (-) False LOC120569506
XR_005641073.1 lncRNA upstream 111294 18815846 ~ 18819321 (-) True LOC120570508
TU168264 lncRNA upstream 111294 18815846 ~ 18816009 (-) False LOC120570508
TU168265 lncRNA upstream 111778 18816330 ~ 18816534 (-) False LOC120570508
TU168273 lncRNA upstream 122990 18827542 ~ 18828502 (-) True G125108
TU168277 lncRNA upstream 139548 18844100 ~ 18844338 (-) True G125112
XM_039818477.1 mRNA downstream 92834 18606426 ~ 18608814 (-) False LOC120570238
XM_039818474.1 mRNA downstream 92834 18606426 ~ 18608814 (-) True LOC120570238
XM_039818434.1 mRNA downstream 96477 18603123 ~ 18605171 (-) True LOC120570204
XM_039817379.1 mRNA downstream 100266 18599472 ~ 18601382 (-) True LOC120569518
XM_039817544.1 mRNA downstream 103193 18581236 ~ 18598455 (-) True dnajc3a
XM_039818677.1 mRNA upstream 136 18704688 ~ 18789294 (-) True gpc6b
XM_039818678.1 mRNA upstream 136 18704688 ~ 18789293 (-) False gpc6b
XM_039819129.1 mRNA upstream 144737 18849289 ~ 18852790 (-) True slitrk5b
XM_039817057.1 mRNA upstream 168511 18873063 ~ 18885787 (-) True LOC120569248
XM_039817218.1 mRNA upstream 194124 18898676 ~ 18903097 (-) True pcdh8
TU168240 other downstream 1846 18695480 ~ 18699802 (-) True G125089
TU168241 other downstream 5280 18695480 ~ 18696368 (-) False G125089
XR_005640956.1 other downstream 537899 18156732 ~ 18163749 (-) False prkra
TU168094 other downstream 586559 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other downstream 586559 18113510 ~ 18115089 (-) False LOC120569287
TU168581 other upstream 891377 19595929 ~ 19597521 (-) True G125326
XR_005640980.1 other upstream 1048491 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168717 other upstream 1085979 19790531 ~ 19796038 (-) False LOC120570223
TU168785 other upstream 1216802 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168944 other upstream 1754610 20459162 ~ 20461629 (-) True G125619

Expression Profile