RNA id: TU168365


Basic Information

Item Value
RNA id TU168365
length 3135
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G125173
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19073235 ~ 19076766 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctttttaaTGATGTTCACAAAATATAACAGGAAAGTACTCAGTGTTCATGTGTAAAGTATTCATTAAATAAAGGTGAATCCAGCCAATGAAAAAGTAATGTGTTACTTGATTGATCACGTCTTGTCCTGTGCAGTGATTTGTCTAGAGCTGTGTGTATGCATTTCTCCAACATAATATATATTCTTACAATGTATAAACAAGATACCAATAAGGTTGTAATAATCTAAATGTTGAACCCCTAATATAACCAATAAATCTTGAAAATAATCCCTATTATATAATATTAGATAATATACTTGAGAGGAGGGTCATATTCTTCTTCATAGAGGCCTTAATATAATCTATTCAAAACTTTAATAATTCTAgttgtattttttactttacataataaaatattgtatacacaaggcaagtttttttttcacagcagttCACATTGGTTGTTACAACCCATGTCTCTTATGTATGGCTTTAAAATCAATAATCAGGACAAAATAACAACAGTTTATTTGTTGAGCAGTGTTTTCAGTGAGTGAGTTAGTGCATTTATAATAGCAGGCATGGAGGCAGAGTGATGTGTCAATGCATTCACACTTTGGTCACTGGGGGATCTTCCTGAAGCTGCTTCAGCAGCTTTCAGCAAACACACGTAGCTCATGACGACCTTGTCCACCTTGGCTACCACCTCGCGCCGCTCTCTTTCGCTGCTCAGGCCTTCCACCAGTGACATGCAGGCCTGCGTTAGGCAGCAGAGTGTGTGGAAGCTGTGTGTCAGAGTGAGCAGTAACTCCTCTGGGCTGCTGTACTCTACACCCATCTGGGTGCAGGCGCTGCTCAGCACTTTCGCCTGCATGAAAAGCAGCTGAGAGAAGTTATCCATGTCAGCCTCGTTGACCTCTCGTCTCGCACCTCTGGACCAGTTGCCGACGCTGGAACGCAACACGCCGGCCATCTCTAAGGCATCCTTACGTGTAAGTGCGAACCCTGTATGAAGGCTGTAGGTTTTTCCCTTCATTGAATTTACACGAGCTAGCCGTGCTTCGAGGCTCATGTCATTCGTAGCTGCATTTATGTTACTCTGCTCAGCTTTACAGTCAGCTTTCAAAACCGAGCTGACAGAAAACAGAGCATGTGAGTGCATCTCTCTGtcttcatcatcaccatcagtgtttttctttctccgCAGGAAGCAGTGACTGAATGGCCCATGGCACCTCCACGTACCTACATCCAGCCTTGGTGCTGTTGACTCTGGCAGCAACAGGGCGGCTCCTCTTAGTAGCCTTCTACCAGACGAATTAGTTGCGACTGAACCCTGGGACAAGCTCTTGGGCAAGGTTTTGGCAGAGAATATCCTCTGTACTTTAGGGGGATCTTGAGATGGGAAATTCGGACCACCACTCCTTCTTGTAAGTGTGGCTCTGGTCTTCTCTATCAGCGCTTCTAAACTCCTGGAACTTGGCATTATGgtgctccagcttctcctgagCATCCGATCCCTGCGTGGCTTCCTGATGCTGCTTGTTTTAGGGTCACATAAAGATCCGCTTGAGGGGAAAGCCAGGGTGTGTGGGTCGGGCTCGGGGCTGGCCTGTGTTAGCCCTCTGCGCTCTGTGCTACTTCTTAATGATGATGGTGACGTGGTTGTGGTGGTGGTACTGGTCTCATTACAGAGAGCTAAAGATGACTCTTCCCCAACCTTCTTCAGCTGTGTGCAAGCTACACTGTGGTTTCTTTTATCTTGGGCTTACGGTGACTGGTATCTCGTGTAATCCCGAACCCAGGCTCAGCACTGGTAGCTGCGTGGATCTTCCTCAGCAGGGTGGGGTCTATGGGATGGCTAACCCTCCCCTGACCTGGGGGCCCATAATGTTTTTCCTCAGCAGTAACATAACTCAGCCCCTTGAGCGAGGACTCTGACAGTACATGCATGTTGTCTGTGGCACAAAGAGGAGAATCCATGGGGGTGacacagctgctgctgcctgtGCTACAACCGGCGTCTATAGAGGAACACTGCGAGCTCTGAAGAGAATTAACGCCTTCACTCTGTATCGATGACATGCGCTTGCTCACGTGGTATTCATATAACCGTGTGACGTCATGATCCAATGGTGGAATCTTAATTTTCTGCTGCTCATTGTCCTGTGAAGTGGCATCTCCTTCTGCAAGGGCAGGCCCTTTGGACGGAGAGTGAGCATTTAACTGTTGGCTTCTATCATCTGAGTCCTGTTTCTCTTCCTTTACTGTCAACCTGTCTGTGTGGAAAGCCTGTGAGTCAGTCACACCATCTGGAGAGAGATTTTCTGCCATTTTGTTTTCGGGCACTCTCTGCTGCCATTTTTGATGCCTGTCTTTAAAATGAGTTCGCCCCAGATCAAGTTGATTCATGTAGTAGGAATCTCTCACAGTGAAAGCGTTATACTTCCCAACAAGATGAGGGGCCTCCTCTCTAGCTGAGTCGTGAGAAGTCGTGTGAGATCTGTCAGAGGATTCACAGGTAACTCCTTGCATTCTGCTCTCTGCCACCCTCTGTTTTCCTCTCTGCCTGCTCATTACTGAGCCCATGTGCATCTTAGTGAAGTATTCACTGACTGATTTTATTTCCATTGTCTCTGGCTCCATCTCACCGCCATCGGAGTGAAAAATCTGGGAGGAGGCAACGGCAGATGATTTAGCCTCCTCATCCTGATGCTCCTGGGTGTTGTACTGCATAGCTCCCGCACCACCATCGCTAGGTGCAGCGACCTCCGTCTTTTCCTCGTTCACAGCGTGGTAACCTTGCATCCTCAGGTGGTTCTCTGAGTGTCTTTGAGCAGCGGCCAGCTCGGAGCTCTCTGTCATCTCAGAGGAATTTGTCTCGTTGCCAGAATCTGAGGACTCAGGACTAAATGCTCGTGATATTTCTACACCTGTGTACCACAGAAAGACAAACAATTAACAACTTCATCTGAGGCACATGAAAAATATCACAGATTAGGGGATGAGCCAAATAAGGTTAATGGTAATGTAATTCAGCATGTATGGGGAGACATGCAGAGGGAATGATTACTTTGGAATAacatacaaataataaatataaatcaatatatAATAAGCACttaaaactacaatcaaattaAGGCATCTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168281 lncRNA downstream 225866 18845832 ~ 18847369 (-) True G125116
TU168278 lncRNA downstream 227940 18844546 ~ 18845295 (-) True G125113
TU168277 lncRNA downstream 228897 18844100 ~ 18844338 (-) True G125112
TU168273 lncRNA downstream 244733 18827542 ~ 18828502 (-) True G125108
TU168265 lncRNA downstream 256701 18816330 ~ 18816534 (-) False LOC120570508
TU168374 lncRNA upstream 12736 19089502 ~ 19090779 (-) True G125178
TU168387 lncRNA upstream 31534 19108300 ~ 19111784 (-) True LOC120569517
XR_005640882.1 lncRNA upstream 31918 19108684 ~ 19113781 (-) False LOC120569517
TU168446 lncRNA upstream 124980 19201746 ~ 19205941 (-) True G125227
TU168460 lncRNA upstream 155226 19231992 ~ 19233621 (-) False tbl1x
XM_039818893.1 mRNA downstream 40046 19010827 ~ 19033189 (-) True LOC120570505
XM_039818894.1 mRNA downstream 49228 19010827 ~ 19024007 (-) False LOC120570505
XM_039818241.1 mRNA downstream 69208 18977212 ~ 19004027 (-) False mid1
XM_039818242.1 mRNA downstream 73562 18977212 ~ 18999673 (-) False mid1
XM_039818243.1 mRNA downstream 76251 18977212 ~ 18996984 (-) False mid1
XM_039817378.1 mRNA upstream 39809 19116575 ~ 19118587 (-) True trappc2
XM_039817373.1 mRNA upstream 51458 19128224 ~ 19158065 (-) True gpm6bb
XM_039817372.1 mRNA upstream 51458 19128224 ~ 19142836 (-) False gpm6bb
XM_039817374.1 mRNA upstream 54159 19130925 ~ 19142832 (-) False gpm6bb
XM_039819101.1 mRNA upstream 112417 19189183 ~ 19195845 (-) True fancb
TU168242 other downstream 368558 18703095 ~ 18704677 (-) False G125090
TU168244 other downstream 368558 18703129 ~ 18704677 (-) False G125090
TU168243 other downstream 368683 18701648 ~ 18704552 (-) True G125090
TU168240 other downstream 373433 18695480 ~ 18699802 (-) True G125089
TU168581 other upstream 519163 19595929 ~ 19597521 (-) True G125326
XR_005640980.1 other upstream 676277 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168717 other upstream 713765 19790531 ~ 19796038 (-) False LOC120570223
TU168785 other upstream 844588 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168944 other upstream 1382396 20459162 ~ 20461629 (-) True G125619

Expression Profile