RNA id: TU168446


Basic Information

Item Value
RNA id TU168446
length 1409
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G125227
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19201746 ~ 19205941 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGATGAAATGTCTATTTATTCGTCATTTTAAAAGAGCAAGTCTTACATAATTAGGTAATAAttttagtagaaaaaaagtaaaacatgctCCAATTTTTGAACAATTGAAATAGGTTGTGTCATACAGTTATAATTAGCTTTGACCATATTCATTAGGCTCATGGAAACAATATTCCATTATAGATTTACAAAGAACAAAAGTGGCAAttcattgataaaaaaaataaaaaaataaaacacttataCCATAATCAcatacaaagaaataaaatgggCCATAAGACATGTAAAATTAGTGAACTTCATGATTTCTACACATTGTGTGTAAGATACAAAATGCAGAGACAAATTAAATCATTGACGATTTTACATTATACTAAAGTGAAAGATTAGTGAAATGCTCATAATGAGGAGTGTCTATTggttatacagtacatattaaAAAGCCATAAGACATGTAAAATTAGTGAACTTCATGATTTCTACACATTGTGTGTAAGATACAAAATGCAGAGACAAATTAAATCAGACGATTTTACATTATCCTAAAGTGAAAGATTAGTGAAATGCTCATAATGAGGATTGTCTATTggttatacagtacatattaaAAAGGCATAAAACACGATTGTCTACATGATTGGCACTCTCCAGAGTCACAGACTCGGTAAAAGATAATGTTAGAGGACAAGGCACACAGGGCTTTTGTTAAAAAGTTGCTTCAAAAAGGCAAGCATGGTTTAAGATCTGGTGCGGAGTGTTATTAACTTGGGCTACTGTAACATAGCAGTAATTGTGTTAGTAGTTTTAATCTGAGGTTAAAAGATACATATATTGTCATATTGTTAATGAGGAGTAGAGACTTTCAATTTTCTTGGAGCTGATTATACAGTGAAATATGAAAGGGTCTCCCTTGGTTGAGTGTTTACATGGTTTTGCGCAAAAGGTAGGCTAGCCTTCATTTAGCCTACTTTCCTTCATAACAAAGTCAGAAATGTTGTggtttttaaacaatgcaatacaATTTTGGGGGTCAAATTGAAATGTGAGGTCCAGGACAGGTCAAGGGATGAACATGTCCAGGGGTTGAGATGACATCAGTCGACTGTGAGGGAGGTGCACTCACAATAATTCAGTTTTGTGAGTACACCTGCCTTTCCAGCTGGTAGAAATCTTCTGGACTCTGGGCTTCTTGTGTGGGTGTGATCCTAAACTGCCTTACCACCTCCAGCCCTTTTTTTGGCTTTACCGCAACCTCAGAGTTGAAGCTGGACTCGAGGGCATCTTTGCCCTCCATTTCACCCTCTTTGCTCTCAGTCTCGTCCTCACTAACAATTGGTCCGTTTTCACAGATGGGTGTTTGGAAGTCGTCATCAGGAAGAGGCGGGTAGCTGTACTTGAAGGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640882.1 lncRNA downstream 87965 19108684 ~ 19113781 (-) False LOC120569517
TU168387 lncRNA downstream 89962 19108300 ~ 19111784 (-) True LOC120569517
TU168374 lncRNA downstream 110967 19089502 ~ 19090779 (-) True G125178
TU168365 lncRNA downstream 124980 19073235 ~ 19076766 (-) True G125173
TU168281 lncRNA downstream 354377 18845832 ~ 18847369 (-) True G125116
TU168460 lncRNA upstream 26051 19231992 ~ 19233621 (-) False tbl1x
TU168536 lncRNA upstream 226123 19432064 ~ 19432431 (-) True G125293
TU168537 lncRNA upstream 229701 19435642 ~ 19436047 (-) True G125294
TU168538 lncRNA upstream 233485 19439426 ~ 19439851 (-) True G125295
TU168547 lncRNA upstream 248476 19454417 ~ 19459245 (-) True G125299
XM_039819101.1 mRNA downstream 5901 19189183 ~ 19195845 (-) True fancb
XM_039817373.1 mRNA downstream 43681 19128224 ~ 19158065 (-) True gpm6bb
XM_039817372.1 mRNA downstream 58910 19128224 ~ 19142836 (-) False gpm6bb
XM_039817374.1 mRNA downstream 58914 19130925 ~ 19142832 (-) False gpm6bb
XM_039817378.1 mRNA downstream 83159 19116575 ~ 19118587 (-) True trappc2
XM_039819108.1 mRNA upstream 8812 19214753 ~ 19221945 (-) True LOC120570636
XM_039819103.1 mRNA upstream 26046 19231987 ~ 19258846 (-) False tbl1x
XM_039819104.1 mRNA upstream 26046 19231987 ~ 19258846 (-) False tbl1x
XM_039819106.1 mRNA upstream 26046 19231987 ~ 19250234 (-) False tbl1x
XM_039819105.1 mRNA upstream 26046 19231987 ~ 19250234 (-) True tbl1x
TU168242 other downstream 497069 18703095 ~ 18704677 (-) False G125090
TU168244 other downstream 497069 18703129 ~ 18704677 (-) False G125090
TU168243 other downstream 497194 18701648 ~ 18704552 (-) True G125090
TU168240 other downstream 501944 18695480 ~ 18699802 (-) True G125089
TU168581 other upstream 389988 19595929 ~ 19597521 (-) True G125326
XR_005640980.1 other upstream 547102 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168717 other upstream 584590 19790531 ~ 19796038 (-) False LOC120570223
TU168785 other upstream 715413 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168944 other upstream 1253221 20459162 ~ 20461629 (-) True G125619

Expression Profile