RNA id: XM_039819106.1


Basic Information

Item Value
RNA id XM_039819106.1
length 3995
RNA type mRNA
GC content 0.47
exon number 15
gene id tbl1x
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19231987 ~ 19258846 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTAAAGGAGTGCTAATCAGTGGGCCGAGTCTTTGGATTgaatgaaaacctgcagactgtcTCTCATGGCGTGGGAGAAGTGTTTCCCCTGGAGACTGAAGGATCCCATCCCCCACCGTTTGCCGACCTACATTAGCTGTAGCTAAGTGACTCATTGAGAGAGGCAAAGAATAATGCACAAATGGTTGTTGTGATTACCTGTGTGGGGATCGTTATTTATCACCCAACTCCCATTCCACCATCCCCCCTCTCTGATTCCCCTCCCCCACTCTATCTATCtcactcccctcccccctcaagACTGCAGCCCAACCAGAAGCTTCAAAGGCGGGTTTTACTCAGCAGAGCAGTTCAAGAGAAAATGGCTGCTGTTTCCAGGTCTTGTTTGCACATCTGTTAGGAGGAGTGAGCCCAGCCTTCCAACATACCTCCTCCTTTTCATTGGGCTAAGATGAGTATTACCAGTGACGAAGTGAACTTCTTGGTCTACAGATACCTCCAAGAATCAGGTTTCTCCCACTCAGCATTCACCTTTGGCATCGAGAGCCACATCAGCCAGTCTAACATCAATGGAACACTAGTGCCCCCTGCAGCTCTCATCTCCATCCTGCAGAAAGGGCTTCAGTATGTGGAGGCAGAAATCAGCATCAATGAGGATGGTACAGTCTTCGATGGTCGGCCAATCGAGTCACTGTCGCTCATTGACGCAGTGATGCCAGATGTGGTGCAGACGCGGCAGCAGGCCTTTCGCGACAAGTTGGCCCAGCAGCAGGCGGCTGGTGCCATGGCAGCTTCAACCTCTGGAAACCAGTCCAACGCACCAAAGAATGGAGAAGCCACTGTCAATGGGGAGGAAAATGGCACTCACAACATGAATAACCACAGTGAGCCCATGGAGATGGATGTAGATGTGGAGATACCAGCCAGTAAAGCCACAGTGCTCCGAGGCCATGAGTCTGAAGTGTTCATCTGTGCCTGGAACCCTGTCAGCGATCTGCTGGCCTCGGGCTCGGGGGATTCCACCGCCAGGATCTGGAACCTGAACGAGAATAATAACTCCAACTCCACCCAGCTGGTGCTGCGCCACTGTATCCGAGAAGGCGGCCAGGATGTCCCCAGCAACAAAGACGTCACCTCACTAGACTGGAATAGCGATGGGACTCTTCTGGCAACGGGCTCGTATGATGGGTTTGCCAGGATATGGACAAAGGATGGAAATCTGGCAAGCACCTTGGGACAGCACAAAGGGCCCATATTTGCACTCAAGTGGAACAAGAAGGGGAACTCTATTCTCAGTGCTGGTGTAGATAAGACGACAATCATTTGGGACGCACACACAGGAGAAGCCAAGCAGCAGTTCCCCTTTCACTCAGCCCCAGCACTGGATGTCGACTGGCAGAACAACACCACCTTTGCCTCCTGCAGCACAGACATGTGCATCCACGTATGTCGCCTTGGCAGCGACCGGCCCCTCAAGACCTTCCAGGGCCACACGaatGAAGTTAACGCCATTAAGTGGGATCCCTCAGGTATGCTGCTTGCCTCCTGCTCAGATGACATGACCTTAAAGATATGGAGTATGAAGCAGGAGTCCTGTGTCCACGACCTCCAGGCTCATAGTAAAGAGATCTACACTATCAAATGGAGCCCCACGGGTCCCGGAACCGGCAACCCCAACTCCAACATCATGCTCGCCAGCGCCTCTTTCGACTCTACAGTACGCCTGTGGGATGTTGAGCGAGGGGTTTGTATTCACACGCTGACCAAGCACCAGGAACCAGTCTACAGCGTGGCGTTCAGCCCCGACGGCAAGCACCTGGCCAGCGGCTCCTTCGATAAGTGTGTCCACATATGGAACACCATGACTGGAGCATTGGTGCACAGCTACAGGGGTACTGGTGGTATTTTCGAGGTGTGCTGGAACAGCACTGGGGACAAAGTTGGTGCGAGCGCTTCAGACGGCTCGGTATGTGTTCTTGATCTCCGAAAATAGCTGACTTGAGACTTTGATGAGGAGTCCTGGAATGTGCAGCAAATTGCCTTCTTCTGacagcagcaaacacacactcattgCTCGAGAAGAGCTGTAAGGTGGAGCGAAACAAACCCCGCACAGGAGCCAACGCCAACTGACTTCAGTGCACTTTACTGTTTGTTGACGTGTTTTCTATAATACGCCTATTGGAAACATAATGGAAGCCGTTTAAGAGATCCCCAAGAATGGACTGAATCCAACTCCCTGGGTGCATCCGTGTTGTAAAAGGTTTCTAATGAGAAAGTGCcgggacccccccccccccctccaccgcCCGGGCCACTGGTCCAGCTGTTATTGGGTTGTAAGGGTGGAAACACAAAGATGAGTTTTATATAAAGAGAAACGTGTTAACGAGACACGTGTTTGGCTGTGAAGGGCAACAAATTATGAAAGAAaggttgtgttgtttttttgttttgttttttttaagaattcctCTGAGCAAATGTTACGTCATGTCCAAATGAACTAACTGGGGACGTGATAAAAGTAACATCAATACTGAAGCACTGGTATTGTCTGTTGACAGGGTGCTTAACTTCTTCCCAGTGGAGAATAGTTTGTTTCAAGAGTACTTcttgcttcttttcttttctttttttttctccacagatGGACTTTTGAAAGTCAAAATTGAATGTGCCGCTACAAGGCAGTTCTTAGCTCACGTTTAACATCAGGTCAACAAAAGGAAAACCTGCCAAGCAACAGTCCTAACCTCCTAAAATGACCTACCCAATTCACTCGAGGTTAGATAATGTCATTTTATGGTCAAGATGTGAAAAGTGTGGTTTACAAAgagttttcccttttttttggaTGTAAATTTCAGAATGTAAAGATATGTAAATTAGATTAATACACAGacttatatactgtgtatatatgtttatatacagtacactttAATGGCTAGCGCTGTCACATCTTTGCTGATAATACGTGACCAGACCTCTTTTTAAATGAAGTGCATGTGTCATCAGCTTCTTTTTATACAGTCTTTTTCAACTGGGCAAATCATATCCAATGCATCGATTCGATTCTTTTTTCAGTGAATCACAAATGGTGTTGACACGGATATGTTAAGCAGCTTTGCTTTTCCACTATTGACCCCTGAAAGCCATGGAAGAAATGAGCACCTCATTACCGGCATTAAGGGAATTATCTGGTCAACAATATGGGAGAGAACAGTCATCACAGTCTCCTGCCTGGCTTCTGCCAAAACGTTGCGTTGTATGTGGAACAGGACATCACAGAATCAATAATGTTAAGAGTATCATGCAGACCTGAGCAGGGAAAGcttatttagcattagcatggtTTCTCTTTGGCACTTTCCTCTGAACAATTTTTTGACCAGAAGGTGGAGGTCAAGGAAAAGTCCTGctgttgcttaaaaaaaaagagctatGTTGGTCTTGTTTAGTCCCACCGACAATGCCCGCGTTGTGGGCTGAGCTTCATCAGCGTGCTGTAAGAGTGGCTCCATCTGCTTACTGGGATCTCATAGAAAAGACAGTCTCTACAAACTAACTTGCCACCACTTTGATTAGCCTTGTTTTCTGGTCCCTTTTAGTCAACGTCTGCTTGAGCAATGTGAAGTGCACTTTTTGTAATGGTGGGTACAGCAAATGTTCAGATTTTGCTGAAAGTTGATGGGCCAATGTTTTTTCCTCTATTTTTAATGTCACAATTGGATGTTAATAGGTGGTTCattgttttcttactttttCATTTGCTGAGAGCCATTATTGTCTGTGTCAGACTGAGAATTGGGCTGTGGGTTGGTGGCCATTCTTGGCATGCTTAGGAGCCCGGTAAGGAATATGTGCTGTGACGGCTAATATCTCTCTCGCACCACGGTCCAGGGTGCAGTCACCTGTTTTCCAAGACAAAACTTTAAAGTCATTCAGTGTCTCAAATAAATCACTCTATTTTGATATCAGAAACCATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168446 lncRNA downstream 26046 19201746 ~ 19205941 (-) True G125227
XR_005640882.1 lncRNA downstream 118206 19108684 ~ 19113781 (-) False LOC120569517
TU168387 lncRNA downstream 120203 19108300 ~ 19111784 (-) True LOC120569517
TU168374 lncRNA downstream 141208 19089502 ~ 19090779 (-) True G125178
TU168365 lncRNA downstream 155221 19073235 ~ 19076766 (-) True G125173
TU168536 lncRNA upstream 181830 19432064 ~ 19432431 (-) True G125293
TU168537 lncRNA upstream 185408 19435642 ~ 19436047 (-) True G125294
TU168538 lncRNA upstream 189192 19439426 ~ 19439851 (-) True G125295
TU168547 lncRNA upstream 204183 19454417 ~ 19459245 (-) True G125299
TU168559 lncRNA upstream 297481 19547715 ~ 19550418 (-) True G125311
XM_039819108.1 mRNA downstream 10042 19214753 ~ 19221945 (-) True LOC120570636
XM_039819101.1 mRNA downstream 36142 19189183 ~ 19195845 (-) True fancb
XM_039817373.1 mRNA downstream 73922 19128224 ~ 19158065 (-) True gpm6bb
XM_039819030.1 mRNA upstream 88707 19338941 ~ 19349059 (-) False LOC120570610
XM_039819029.1 mRNA upstream 88707 19338941 ~ 19349059 (-) True LOC120570610
XM_039817069.1 mRNA upstream 99529 19349763 ~ 19355290 (-) True klhl6
XM_039817709.1 mRNA upstream 215490 19465724 ~ 19468732 (-) True rpe
XM_039818602.1 mRNA upstream 241277 19491511 ~ 19498560 (-) True ackr3a
TU168242 other downstream 527310 18703095 ~ 18704677 (-) False G125090
TU168244 other downstream 527310 18703129 ~ 18704677 (-) False G125090
TU168243 other downstream 527435 18701648 ~ 18704552 (-) True G125090
TU168240 other downstream 532185 18695480 ~ 18699802 (-) True G125089
TU168581 other upstream 345695 19595929 ~ 19597521 (-) True G125326
XR_005640980.1 other upstream 502809 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168717 other upstream 540297 19790531 ~ 19796038 (-) False LOC120570223
TU168785 other upstream 671120 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168944 other upstream 1208928 20459162 ~ 20461629 (-) True G125619

Expression Profile