RNA id: TU168547


Basic Information

Item Value
RNA id TU168547
length 4790
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G125299
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19454417 ~ 19459245 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGACAATAGCAAAGTGCCTTTTTAATGGTCACGATGGCAACTATTTGATAGAAtaacaaatgaagaaaaaaacaaaccatgGTCATATAAAAATACATCACGGAAATTAAAGCATCACTggctgaactgaaaacatcactACAAACTATCTTACACCTAAATCTGGAGCCAGCACACAGCCAATACATGCAGCCCTCAAAACGCAGCTACAACACTGTCGGAAACATTCAGAGGAATCTTGGGAGGCAGCTATTGATGGTATTGATATTATTactacaaaaaaacaccattcaGAGTTTGACTGTACAGCTCCAATGATGGTGGCGGCGCTGTGACATCACACACCACTCCCTGCACTTCCTGACTCAAATCTAGAAAGATGAAATTAATTTTGCATGATTTAAGTGTAGGATTATGTGATTTACAGACTGAAGCTGAAGCAGCTGTTTAGTGCACCATTTACACAACCTGCATCTCTGGGAATGTTCAAGATTTATAAAAGGCAATCATTCAGTCAACAAACACACTccttaatttgtttgttttgcttattaaaaactgaaaacagctCCCTATTAACATTTACTGCCAATGCAAATGCAAGTCACACAAGACCTTTTCAACAGCTCCATCAATTATTCCTGATGATACTCTGGCCAGAAAATGCACAGCATGGCATTCCTGCTTTTTCAGTTTTGATATATATACTTGAACTAGCATCACATCAAATAGCAACAGGAGGCTAAAGACAGTTTATAATGGAAAAAGAGAGGTAGTCCACACACTGAATCTTGGTATTTAATGTGGCATAATTTCGATCACCAAGGTCTTTGATAGGCAAACACCCATgtgtgtgaaaaataggcgaTATATATACAGAGAAACCTCCAACTCCAATGAGAAGATCACAATAACTAAAACACACTCATTTTTCTCATGCACAATCACAATATTGTACGTATTTCCTTCATTGTACATTTGTCAAAAATGTGTATTAtacagtgtgtatatattatatataGTGGATCATTGTTTGGCTTTTgaaatttattttatgtatcaTGTGTTCTTGTATTTGGAGTTgttctttttagtttttctctGGATGTTTGCTTGACAAAGACTTTGATGGTCGAAATATTGCCTCATtaatatttgtaatattttgtgcatgtaccacttttctttttccattgGGTGCTGCTTTAGTCCGACACCTTGTACTCCAAGAAAACACTTGCAAACACATGGTTAATGAGTAGACTGGCAGCTAATCGATCGCCTTTACTTTGTAGACACTGATCAATCTAGTTGTAGCTGAACTTGCTGCACGTGCATCACATTTCACAACTCCCCTGACTAAACAGCACCAGCCTTACTCCACATGGAATAGTATGGTCTACTTGAAATGGGCCCGTTACCTTGAAAAACAGTAAAGAAAGTTGTAATCCCAGAACTGGGTGACTTGTGTCAGTATCAGCTACGTACTTTTGGCTTTCTTTGACATAAATCTGTTTAATGAAGTGCTGCATAAAAGCAAAGCATTAAAAAGACAATATGAGAAATAACATCCATTACAATCCCAACAACACCCATTCTTGAAATAGATTACTTTCATAAATTGTATAAAAAAGTGGATGTAGCCTCCAGTTCTGAAAAGTGAAGTCAATGCGGGAGTGCCTTAAACCTGGATTCTTTCTAATGGCCAGCAAGGGGCGACTCCTctggataaagaaaaaaatctgatttgatgaagtctatgagaaaataacCCTACTTCTCACGTGAgatattacctcagtaaacgtTTCCGAATGAGTTCATGGTCTCAATccctagtttcaagtcttcctCAATACAGCATTATGCTTATTTTGTAAATGATGGTCTTATTTAGAGTCAATTTCGACAATAAAGCAGGGCAtgctttagggcgtggctaccTTGATTGACTTGACTTGTCGCTACCATGCCAACCtctcaatcaggacagaggctaaGCAATGCACATCTATTGCattgtgtacattaaaatagccgTGAAGTTATTTTTGGGTGAGGTTTGTATTTTCGTGTTagaactttgaccctctcactgtttTCAATTCATGAAAGTTAATTGTAACATTTGGGCGCATTAACATTTCTTGCTCAGCGTTTGGTTGTAAGTAGTCAACTGTTAAGTCAATTTTGTTTAAAGCCTGTTTTTCAATTGCCAAAATTAGCATCCCAATTAATAGGTTAATGTGAGTTATGGATGCTCCAGCGTTAGCTGATAACTTAGCTCCCTCTCATCCAAATACGTCACTTCTGGCTACACAGTCGAAATGCCAGACTCGAGGCTTCAAAACggtagtccacaaaccaatgggtgacgtcatgGTGGCTACTTTCACTTCTTTTATAGTCTATGATTACTTCACAGGTTTCAAGGGCATGTGGAATTGGTAGGCAAACATTGTACATGACGAGGGACCGGGCTTTGTGTTGACTCTTGGCTCAGGAagttggtggtggtgggggcactgctctgtcacacaaacacaatgctCAAAGagttcaaaatttaaaaaacatcaaGATTCCTCCTGCAATATTGTCATGCAATATACATGTTGACACGATCGATTGAGACAACAATGTCAAGTTTTTCAAGAGTTTTCATGTCCAGTCTGGCAGTGAAAGGGTTAGGCCCAGGTTGGGTAAAGGATTTCATACATCTCCTGGTTGTTGCATTCCAGGGAAGGTGACacagattttcaacccttctgccTTGCATCAGGAGAGCTGAGGATGATGCCTTCAGCTAGAATCCATGATTAGAAGACGTTTTAACAGTTCGGTTTCAGCCGTCTTTGATCAAACATTCTACCTAGGTGTTACATCACATTTCACTAAATAAACTCGACCCAAGCAAAAAGCATTAAGTGAATTAATTTTTGTGACTCGTCTGTTCAACTATTGTACATGTAAAGCCACAGTCATTTTCATTATAGGTATAGATATGCAGTGTTTTGACACTGACCAAACTTGACAATCTGGTATGAAATGCTACAGACTGCAATGCGCAGGACAAATCTAGCATTTCTACATCTACCACATTGCCAACACACAGGCTATTGACATAAACTGCTTGGTGCAGTTGCCTGGCAACACAAGACCACAGTTCTTAGAGAATTTcaaagcaaaaagaaaatcttaCAAAGCTATGCAAAGtagtaaaaaacaataaatagaaaaatatttaaaataaacacaaaagtcAAGCGTTTTGCCCCCGCCCATCAATTTGTTTTCTTATAATGTGCAGataacatttttaaagtgttttactACACATCTACACATTAGTAATCTTCAGTGTGGCtcttaaaaaaatctaaataatttaaaaaaaactaaaatatgcaTCTTTTGATATCCTTTAAAAACTGGACGAAGTGGTCATACTGGGCAACTTAAAGAAATGTGCAAGAATTGAATTTGTGTAATTTAAGCAGGACAATTCAACTGATTTAAGGGGAGTGAAAAATTGCCCTTTTGCCCTAAAGTCCCATAAACCCACAGCAGGAGGTAAGCAGACATATTTACAATCCGCTTCAAAAACCAATCAGCTTTCCCACTCTCTTTAAAACTTCAAACATTAGCTGCAGAGAACAGCGTGGAAATAAGTAGGTCTTGGCACTCAAAAAAATCCCTCATGTCAGTGTACTTATATCCTCAGCAGGAGAGAGCTGTTCATTTACTTTCCATCATTTCCAATGttcctccatctctttctcttgtTGTCCGTTtctggagaggaggaggatagaGGAGAAGAGCGGAGCAGTCTCTCGCTAAGACCAGAGTGTCTGGCAGTGTTTAAGTggacctgtttctgtctgccAAGGCAAATTCATTGTGGAGGCAGGTGGGCCAACACACATCCTCACTTAGGACATAGACTTGTGTGTCCTTGCCTTTGTCTCTATCCAGGCTGGCAACCAAGTCATCAGCTACGGAGTCAGCGGGCGCAAAGAATCACTATGGCAACCAACATAGTGGGCCAGGCTGTGGCTGCTCTTGGATCAGTGCGGAGACTGTTTTGGCATCCACTCAGTGCTGGAATTGAATATAGAGTTCCTTCTCTTAAATGTTATTCCAGGATCGGCCAATGATCTCAtgtgtgcagttttttttttctcttttaaaaaatagacaaatattcagagtaaaacaaaacaaaatgcagcTATGAGtttcacagaaaacaaaaatgagaGGCTCATGATGCGCTCATCCTTCATTTCGCACTCACACAATTAATCGTGCTAACATGGCACACCCATTCTagtgtatacatacacacacacacacacacacacacagttgttaaCGTATAACAGGCAGCCACCAGGGTAGTTGTTAAAGTGATCAACTGATTGACTAATTCAACACAGCAGTGAACGACAGTAAGGTCTGAAGGTGGAGTCCAGATCTGCTCCTTGGCATTTTGTTGGCTGGATCCACGATGTGCGCGGGGCAGAGGGAAGGACCCTCGCTTAGTCAACAGAGCCAGGGTGCAGGCTGAGTGCAGGTGGGTCCAGACAGGTGGGAGAGTAACTTAGGTGAGGTTCTTTAATCCACAGGAGGGGGGCGCCATTCTTGCCTTCTTGACTCTTGCTGTTGTTGCGGCTCTTGTAGCGCACTAGCAGTACGGCGATGAGGAGGATGCCGAAGATGGGGAAGGGATAAAAGAAGACGAAGTAGAAAAGGGATTCATTGGAGCACACCACTGACTGGAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168538 lncRNA downstream 14566 19439426 ~ 19439851 (-) True G125295
TU168537 lncRNA downstream 18370 19435642 ~ 19436047 (-) True G125294
TU168536 lncRNA downstream 21986 19432064 ~ 19432431 (-) True G125293
TU168460 lncRNA downstream 220796 19231992 ~ 19233621 (-) False tbl1x
TU168446 lncRNA downstream 248476 19201746 ~ 19205941 (-) True G125227
TU168559 lncRNA upstream 88470 19547715 ~ 19550418 (-) True G125311
TU168569 lncRNA upstream 110365 19569610 ~ 19570807 (-) True G125315
TU168673 lncRNA upstream 218756 19678001 ~ 19680728 (-) True G125398
TU168691 lncRNA upstream 271210 19730455 ~ 19730711 (-) True G125411
XR_005640851.1 lncRNA upstream 322848 19782093 ~ 19782621 (-) True LOC120569251
XM_039817069.1 mRNA downstream 99127 19349763 ~ 19355290 (-) True klhl6
XM_039819030.1 mRNA downstream 105358 19338941 ~ 19349059 (-) False LOC120570610
XM_039819029.1 mRNA downstream 105358 19338941 ~ 19349059 (-) True LOC120570610
XM_039819106.1 mRNA downstream 204183 19231987 ~ 19250234 (-) False tbl1x
XM_039817709.1 mRNA upstream 6479 19465724 ~ 19468732 (-) True rpe
XM_039818602.1 mRNA upstream 32266 19491511 ~ 19498560 (-) True ackr3a
XM_039817121.1 mRNA upstream 92081 19551326 ~ 19556641 (-) True casq2
XM_039818776.1 mRNA upstream 98265 19557510 ~ 19559519 (-) True LOC120570428
XM_039818774.1 mRNA upstream 111626 19570871 ~ 19575591 (-) True LOC120570427
TU168242 other downstream 749740 18703095 ~ 18704677 (-) False G125090
TU168244 other downstream 749740 18703129 ~ 18704677 (-) False G125090
TU168243 other downstream 749865 18701648 ~ 18704552 (-) True G125090
TU168240 other downstream 754615 18695480 ~ 18699802 (-) True G125089
TU168581 other upstream 136684 19595929 ~ 19597521 (-) True G125326
XR_005640980.1 other upstream 293798 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168717 other upstream 331286 19790531 ~ 19796038 (-) False LOC120570223
TU168785 other upstream 462109 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168944 other upstream 999917 20459162 ~ 20461629 (-) True G125619

Expression Profile