RNA id: TU168559


Basic Information

Item Value
RNA id TU168559
length 2311
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G125311
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19547715 ~ 19550418 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAAAACAAacgtgttccttgggagtgaTTTAtacaaaccacgatcttttcctaaacttaaccgtatctccgccgaaattccgccggatgaaTGTATTTTCgctgatgtccgtttccttctgctttcttagtgttggaattttaaactccggtggatttatgaggactatggctaactagctcctcagatctctgcatggtgaaaaacatttaatgtgGGATGTTGTGATttcacaacaaaaaaatgtgtttctaaCTAACAACTTACTATCCATGAACAAAGTTACATGACTACACTAACTAACAGTTAAACTACTAGAAAGGCTGCTAAAATGTATCAATCATTGTaacataaaattacaacaatcaAATGCCGTAAAAAGgtcgatacaaatatttatttttttacaaatgtgacTTTGACACAGCTGCTGTGATTTTACATGTTCTGTTGTATAAAAGAAGACAGGAACAAAGTATTTGGAAAAGCATCTCTTTTCTTCATTATGttccctttcttctctctctcactctctcgctctctcacacacacacacacacacacacacacacacttgaaaacTGTACATGTATGCTGAGCACATCCTAAATATGTATAACTGAGGCACGTGTAGTCAAGAACTATTTACAACCATCAACACTCTAAAAGCCTAAACAAAACTACACCATCATTGACCACAGTAACACTTGTGTAAATATAAATTTACAACATAACAGTGCTCATAAATACAAAGGGTTTGAAAAAAACAGATTAAATATTCATACGAATCAACAGTTTGATTGAAGCTCAGGACAGTGTTCCTGTTCCAGTAGCTGCAGATAGGTGGCAGTAGTGTGATACTGAGACAAAATACTGACAGCAGAAATACTGACACTGGGTTGATCTGATTTACACTAAATTATTCATTTGCAGCACATGTTTAAACACTTGCCAGCATGAAATAAGTGACTATTCATTTAGGTGAGAAagtaggttaggttaggttatgcATTTTCTTGTGCTCCATGATTTACATTATGCAGATGGGTGCTGTAACAATACACTCTCCTCATGATGAATTAAGATGAAAATCAGTggcatatgttttaaaattaaacagcACAAAGGCAACAGTTTTAACACAAGATATAAAAGGTCACCCACATAAACCTAATAGCGTTCTCTCTGCTGGCCTACAAAAAGATCAGTGTACACTGCACACACTTGACTGTACATACACAATAAGTGGTCACGTGTTTGCTCACAATCTATTGGCTAGAACCATCTATATTCAGCTGTACTGTGGTTGCACTCAGTCCAAGAGATTCCAGTGATTTTGACATTTACAAACATGTTTCATCTATTTACAGTACAGTTATCGCCACAATAACAGTGCAGACAGACAAGGTAAAAAAACATATCTttgacaatgtaaaaaaaaaatctagcaATGCACAATTTTGATATAAAAAGTCTGGAAGGATAAAGTATATTcacatataaatactgtacatacatctGTAATACAGGGCAGTTAAATAATTGTTGTGAAAACTAAAAGAGTAGTTTGGGAGAAAAAGGGTTCAGGTTATATCAAATGTCCCAGTCACTAACGCTAAGGCGAAAGAAGAGACAGGTCTAGACAGATCCTGAGTGTACgctacactcaaaacacatACTTTTTCATCCTAAATCACACACACTGCTCAAAAATCATGAACTCCCCCACGCAGGCACACACTGGCACAtgcaaataaaaggaaaaagaagGTTTGTGAGGGTCATCTGTCGTGCATAGAGGAATACCTGAACTGTGTTCTGCAAACGTCAGGACAGAGAAATCCAAGCATACTCCCTCCCATTTTCTGTCTTTGATCACCTTTCATGTTGCTCGGGACAAAGACAAGGAAACAAAGATATTCTTTGTGAGGAAATTACAtaaacaaaagtacaaaaaaaacagtacaaaaaGTCATTGTTTGAAAAATTCAGTCGGAGATGTGTAACAGTCCTGTAAGTCCAGATCAGCAGCACTGGTCCACTGCGTTAAACTGAGGTTTCTGATTGGAGCAGCAGTATAAACTTGTGAGACTTGGGGTCTATGTACTCCTCAGTCAGTCTGATGTACGGGATGCCCTTGACGGTCACAGCTAAGCTAAAGTCAAGACATCTTAGCAGGAACTCTGACCCCTCCTTTATGCCGCCGGTGACAGAAGCCTCGCTGACCAAAGTCCACTGGTCTGCCATCCAGCGCTCAGGGCCGTACTGCAGGGTCGGACCAGGGGCCAGGTATGCCTCGAGGAACGCct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168547 lncRNA downstream 88470 19454417 ~ 19459245 (-) True G125299
TU168538 lncRNA downstream 107864 19439426 ~ 19439851 (-) True G125295
TU168537 lncRNA downstream 111668 19435642 ~ 19436047 (-) True G125294
TU168536 lncRNA downstream 115284 19432064 ~ 19432431 (-) True G125293
TU168460 lncRNA downstream 314094 19231992 ~ 19233621 (-) False tbl1x
TU168569 lncRNA upstream 19192 19569610 ~ 19570807 (-) True G125315
TU168673 lncRNA upstream 127583 19678001 ~ 19680728 (-) True G125398
TU168691 lncRNA upstream 180037 19730455 ~ 19730711 (-) True G125411
XR_005640851.1 lncRNA upstream 231675 19782093 ~ 19782621 (-) True LOC120569251
XR_005640852.1 lncRNA upstream 232310 19782728 ~ 19784773 (-) True LOC120569252
XM_039818602.1 mRNA downstream 49155 19491511 ~ 19498560 (-) True ackr3a
XM_039817709.1 mRNA downstream 78983 19465724 ~ 19468732 (-) True rpe
XM_039817069.1 mRNA downstream 192425 19349763 ~ 19355290 (-) True klhl6
XM_039819030.1 mRNA downstream 198656 19338941 ~ 19349059 (-) False LOC120570610
XM_039819029.1 mRNA downstream 198656 19338941 ~ 19349059 (-) True LOC120570610
XM_039817121.1 mRNA upstream 908 19551326 ~ 19556641 (-) True casq2
XM_039818776.1 mRNA upstream 7092 19557510 ~ 19559519 (-) True LOC120570428
XM_039818774.1 mRNA upstream 20453 19570871 ~ 19575591 (-) True LOC120570427
XM_039817493.1 mRNA upstream 145033 19695451 ~ 19702019 (-) False acp6
XM_039817492.1 mRNA upstream 145033 19695451 ~ 19702019 (-) False acp6
TU168242 other downstream 843038 18703095 ~ 18704677 (-) False G125090
TU168244 other downstream 843038 18703129 ~ 18704677 (-) False G125090
TU168243 other downstream 843163 18701648 ~ 18704552 (-) True G125090
TU168240 other downstream 847913 18695480 ~ 18699802 (-) True G125089
TU168581 other upstream 45511 19595929 ~ 19597521 (-) True G125326
XR_005640980.1 other upstream 202625 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168717 other upstream 240113 19790531 ~ 19796038 (-) False LOC120570223
TU168785 other upstream 370936 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168944 other upstream 908744 20459162 ~ 20461629 (-) True G125619

Expression Profile