RNA id: TU168715


Basic Information

Item Value
RNA id TU168715
length 893
lncRNA type sense_over
GC content 0.48
exon number 3
gene id LOC120570223
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19790052 ~ 19796220 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTAACCTAATAAtgtcatacagtatataatgtatTACTCACATCTGAGTACTCCTTCCAcaaccagggctggactggccatctggcataccgggcattttcccggtgggccgacggacttttgggccgaatcgccgatataaataggcctttttttattttttggccgggccggcccataaagaactcacagcggcccattggttaattttctttattggcactggcctgacccaatgaaatccaggaacccccttcctcactccgggccgcaaatttacgaatcccactatggccacgcctcccggccctgagacgtgagctgtaatagttatgctggaagtttagcattcacgttataatggacaaacgaccaccaagtgcaagggaggtgcagagaaattagaggagaaaaagattaagaatctacaggcggattcctcaaaaatttcggacatgtttgggtctgtagtagctgcttcaacatcagcattacctgaagtagaggaggagaggtggctggctatagaagcagaaacaacgatgtcagggaagatggcgaggaggaggcgagtgaggaaaagatggaagagagagtagatgacgatgtgAAAACTCGGGGCCAGGACACCAAACCAGAACCCAGTCCAGGAGCAGTTTGATCTTCAGTCGGAAGGAGAGGTGGGTGTCCCTCAGCCGCAGGGTGTCACAGACAGTAGGGCAAATTACAAACACGGGAGTCAGTACACGGAGAGACTCAACTCAATCTACGGTCTCTGAGCtgacaatgcatttaaatgaaaGTTAAACAAGAGACATGGACAATCAGAGGAAGGACAACTGGGTCCCTGATGCCTTTGGCTCATCTAACATTAACACATTAAAACCAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640852.1 lncRNA downstream 5445 19782728 ~ 19784773 (-) True LOC120569252
XR_005640851.1 lncRNA downstream 7597 19782093 ~ 19782621 (-) True LOC120569251
TU168691 lncRNA downstream 59507 19730455 ~ 19730711 (-) True G125411
TU168673 lncRNA downstream 109490 19678001 ~ 19680728 (-) True G125398
TU168569 lncRNA downstream 219411 19569610 ~ 19570807 (-) True G125315
TU168723 lncRNA upstream 25095 19817239 ~ 19860237 (-) True G125434
TU168724 lncRNA upstream 28424 19820568 ~ 19860237 (-) False G125434
TU168725 lncRNA upstream 30626 19822770 ~ 19860237 (-) False G125434
TU168720 lncRNA upstream 31600 19823744 ~ 19824404 (-) True G125432
TU168751 lncRNA upstream 105523 19897667 ~ 19897930 (-) True G125458
XM_039817058.1 mRNA downstream 16187 19771293 ~ 19774031 (-) True LOC120569249
XM_039817911.1 mRNA downstream 21632 19751701 ~ 19768586 (-) True si:ch211-214p13.3
XM_039817912.1 mRNA downstream 21633 19751701 ~ 19768585 (-) False si:ch211-214p13.3
XM_039817495.1 mRNA downstream 74298 19704828 ~ 19715920 (-) True gja5a
XM_039817494.1 mRNA downstream 88708 19695451 ~ 19701510 (-) False acp6
XM_039817084.1 mRNA upstream 108098 19900242 ~ 19907077 (-) False nr1i2
XM_039817083.1 mRNA upstream 108098 19900242 ~ 19907077 (-) False nr1i2
XM_039817082.1 mRNA upstream 108098 19900242 ~ 19907076 (-) True nr1i2
XM_039819024.1 mRNA upstream 116350 19908494 ~ 19913720 (-) True cfap91
XM_039819008.1 mRNA upstream 129124 19921268 ~ 19923735 (-) True si:ch211-214p13.7
XR_005640980.1 other downstream 21632 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168581 other downstream 192697 19595929 ~ 19597521 (-) True G125326
TU168242 other downstream 1085541 18703095 ~ 18704677 (-) False G125090
TU168244 other downstream 1085541 18703129 ~ 18704677 (-) False G125090
TU168243 other downstream 1085666 18701648 ~ 18704552 (-) True G125090
TU168785 other upstream 129210 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168944 other upstream 667018 20459162 ~ 20461629 (-) True G125619
TU168946 other upstream 671965 20464109 ~ 20467185 (-) True G125620
XR_005641101.1 other upstream 1071641 20863785 ~ 20863953 (-) True LOC120570677
TU169256 other upstream 1166179 20958323 ~ 20960064 (-) False G125842

Expression Profile