RNA id: XM_039818461.1



Basic Information


Item Value
RNA id XM_039818461.1
length 1284
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC120570223
representative True

Chromosome Information


Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19790052 ~ 19796220 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


tttattacatGACCTTCAAGAAGGAGCAAGTTTCAATTCTCAATTCCAAGTGTATGACATCCAACCTTATACACGCGACGCAACTTACCGCAAAAGGAACGACATGCGCATTGGTTCTGAGCAGCCAAATCAACTAACTAACTAGCAACAAACCACTTCCTCTTCTTTGTGCCTCCTCCGCAAATATATCTCCGAGCTGATGTTGAAGTTTCAGTCTGTGTCTGATGGTCATTATGTTCAACCGGGACCAAGCAGCTCTGCTCTCCATTCAACTATATGTTATGGGTCAGGTCTTTGCAGAGATTCTTTCACAGACAGATGAGCACAGGAATATGCTGGTGTCCAGGGGAGACCCCGTCATCCTCATTTGCAACATATCAAAGACAAATGCAACGCAAATCATCTGGACCAAAGGCAGATCTTTTTTTGCTCATCTAGTCTCAGACAATAAGACTGTTTCAAATTTCACCTCTCACAAAATAGACATAAACTTACCTTCAAAGCTGAATATTTCTAATGTTCAGCATGACGATGCAGGACTCTATAAATGTGATATAACTGACAGACAAGGTAGATGGACTATCAAGTGGAATTTAACAGTGTCTGGGGAACCTCAAGATACAAGCAAAGAAATCAGTCCATTGCGGTCTTTTCTATACATACTTACAGCTGTAACTGGATTGCTACTATGTGTCTTCACTTCAGCTGTCTGCCTCCACAGATCCACAGACCCTGGAATGTCAAAACAGAGATCCTTGTCGTAGGGTCCCAGCACTTAGCAGAACACATTCTGCCTACGACTGGTCCCCTATTGGACAACATCAAGCCTGTTGCAAAAAACTCGGGGCCAGGACACCAAACCAGAACCCAGTCCAGGAGCAGTTTGATCTTCAGTCGGAAGGAGAGGTGGGTGTCCCTCAGCCGCAGGGTGTCACAGACAGTAGGGCAAATTACAAACACGGGAGTCAGTACACGGAGAGACTCAACTCAATCTACGGTCTCTGAGCtgacaatgcatttaaatgaaaGTTAAACAAGAGACATGGACAATCAGAGGAAGGACAACTGGGTCCCTGATGCCTTTGGCTCATCTAACATTAACACATTAAAACCAGAGCTGTCACtttagggatttttttttacttttactttacttaccTTACATGGTACTCTGTGTATTTTAATATGTTGTTATGTATAAGTTGGTTTTATGAGTAGTATGCTGTGTTGAATGTTTTCACGTCTGTCAATGTTAGTtgtaatgacaataaaggtATCTCAACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005640852.1 lncRNA downstream 5279 19782728 ~ 19784773 (-) True LOC120569252
XR_005640851.1 lncRNA downstream 7431 19782093 ~ 19782621 (-) True LOC120569251
TU168691 lncRNA downstream 59341 19730455 ~ 19730711 (-) True G125411
TU168673 lncRNA downstream 109324 19678001 ~ 19680728 (-) True G125398
TU168569 lncRNA downstream 219245 19569610 ~ 19570807 (-) True G125315
TU168723 lncRNA upstream 21019 19817239 ~ 19860237 (-) True G125434
TU168724 lncRNA upstream 24348 19820568 ~ 19860237 (-) False G125434
TU168725 lncRNA upstream 26550 19822770 ~ 19860237 (-) False G125434
TU168720 lncRNA upstream 27524 19823744 ~ 19824404 (-) True G125432
TU168751 lncRNA upstream 101447 19897667 ~ 19897930 (-) True G125458
XM_039817058.1 mRNA downstream 16021 19771293 ~ 19774031 (-) True LOC120569249
XM_039817911.1 mRNA downstream 21466 19751701 ~ 19768586 (-) True si:ch211-214p13.3
XM_039817912.1 mRNA downstream 21467 19751701 ~ 19768585 (-) False si:ch211-214p13.3
XM_039817495.1 mRNA downstream 74132 19704828 ~ 19715920 (-) True gja5a
XM_039817491.1 mRNA downstream 88034 19695451 ~ 19702018 (-) True acp6
XM_039817084.1 mRNA upstream 104022 19900242 ~ 19907077 (-) False nr1i2
XM_039817083.1 mRNA upstream 104022 19900242 ~ 19907077 (-) False nr1i2
XM_039817082.1 mRNA upstream 104022 19900242 ~ 19907076 (-) True nr1i2
XM_039819024.1 mRNA upstream 112274 19908494 ~ 19913720 (-) True cfap91
XM_039819008.1 mRNA upstream 125048 19921268 ~ 19923735 (-) True si:ch211-214p13.7
XR_005640980.1 other downstream 21466 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168581 other downstream 192531 19595929 ~ 19597521 (-) True G125326
TU168242 other downstream 1085375 18703095 ~ 18704677 (-) False G125090
TU168244 other downstream 1085375 18703129 ~ 18704677 (-) False G125090
TU168243 other downstream 1085500 18701648 ~ 18704552 (-) True G125090
TU168785 other upstream 125134 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168944 other upstream 662942 20459162 ~ 20461629 (-) True G125619
TU168946 other upstream 667889 20464109 ~ 20467185 (-) True G125620
XR_005641101.1 other upstream 1067565 20863785 ~ 20863953 (-) True LOC120570677
TU169256 other upstream 1162103 20958323 ~ 20960064 (-) False G125842

Expression Profile