RNA id: XM_039819008.1


Basic Information

Item Value
RNA id XM_039819008.1
length 1334
RNA type mRNA
GC content 0.39
exon number 4
gene id si:ch211-214p13.7
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19921268 ~ 19923735 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTGCACTCAGatacagcagcagagagatcaGTGAGATCAGTGTCTACTGCAGTGTCAAGCAAGCTTAGGGTTACGACCAAGCACTGGTACTTTCCACCTGCTAACAATAACATTGGGATCATTCAAAATTCTGTGGGCACATCATGGGAAACTGCACTTCTGGGataaagaagaaaaggaaagGGAATTCTGCACCAGATGGAAAAAGCAGCACAGATAACAAGCCTAACGAGGATGTAACGTATGCCTCTATAGACCACAGCTCCGCCAGAGGAACAAATAGAACCAGAGCTACAACTGACGATGATTGTGACTATGCTACGGTTCATATCCCAGCAGCCCTTCAACCTGAAACTGTGTCTGAGTGCTCATCTAAAGACGAATGTGCAGACGATTATGTGCTCATGGGGTAAAGTGAAACGAGAAGTTGATTCTGGCTATTGCAAGATGCAGAACTCGTAGATAATATCACAAACAGGAGAATGTTTCTGTTAATTAAATCTTGATCTTCAATGAAGACACTGTgataaaatgaagaaaaaaaacattcacagtAAACAGCAGCTGGTTGTGGAGCCCCCCAAGATGTTTTGCCTCACCTTTGAGGTAACCTTAAGGCTGAACACAACTGTGATGTCCCTTCCTCGAGAAGACAAAGTTGCGTCCCATTTGACCTCTTTATAGAAGGAACTCAACCTCAGGAGTAGAAGTTGTAGTTCTTCAGTCTGAAATGAAGCGTCATGACATTAGCACATTATCTGGAATCAGTCAGAGAACACTGGAGCTTCTCACATACACCATAATAGTTACACCATGACCTGAATGACACTCTCTTATTATTGCATATTTAACATAATTTTGTTGGCATACACTTTTGTTTGCAGTAAAATGTGTCAACAAAATTGGGGTAGTAGGTGTATGTGTACGCTACAAATAGATTCCTGAAACGTTGTGGCATTGGCACAGTATCTGGAAGTAGTAGACTAAATGCAATGAAACTTAACTCTCCAAAACTCATACATAATTTTTTACCCACTCATGTAAGATATTTTATCGGTTTCGAACATCTCCAAAACAGTGAACCCAGAAGCTTCTGACAAACAATTGTTAGTTACAACATGATGTGAATGACTGAGCATCCATGTTAAAGCAAccatccattgttttttttaattgctcttcAAAATTGGTGTATTCGGTGTGTTACTTTCATTTTtcaaggagtgtgtgtgtgctataaaAGTGGGAGATATTTTTATTGATAAAAAGTTAACACTTTGTTTATTATTCTATTGTATTGCTCAACTGCATCACTAAAAACATTTCCAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168753 lncRNA downstream 22094 19898684 ~ 19899174 (-) True G125460
TU168752 lncRNA downstream 22886 19898002 ~ 19898382 (-) True G125459
TU168751 lncRNA downstream 23338 19897667 ~ 19897930 (-) True G125458
TU168725 lncRNA downstream 61031 19822770 ~ 19860237 (-) False G125434
TU168838 lncRNA upstream 67673 19991408 ~ 19993321 (-) True G125524
TU168856 lncRNA upstream 219848 20143583 ~ 20144749 (-) True G125539
TU168860 lncRNA upstream 223681 20147416 ~ 20149179 (-) True G125543
TU168871 lncRNA upstream 306350 20230085 ~ 20232060 (-) True G125551
TU168926 lncRNA upstream 406773 20330508 ~ 20330715 (-) True G125605
XM_039819024.1 mRNA downstream 7548 19908494 ~ 19913720 (-) True cfap91
XM_039817084.1 mRNA downstream 14191 19900242 ~ 19907077 (-) False nr1i2
XM_039817083.1 mRNA downstream 14191 19900242 ~ 19907077 (-) False nr1i2
XM_039817082.1 mRNA downstream 14192 19900242 ~ 19907076 (-) True nr1i2
XM_039818461.1 mRNA downstream 125048 19790052 ~ 19796220 (-) True LOC120570223
XM_039817226.1 mRNA upstream 10415 19934150 ~ 19943910 (-) False zgc:113337
XM_039817225.1 mRNA upstream 10415 19934150 ~ 19943910 (-) False zgc:113337
XM_039817224.1 mRNA upstream 10415 19934150 ~ 19943910 (-) True zgc:113337
XM_039817227.1 mRNA upstream 29495 19953230 ~ 19958864 (-) True pdzk1
XM_039817230.1 mRNA upstream 102344 20026079 ~ 20118310 (-) True LOC120569358
TU168717 other downstream 125230 19790531 ~ 19796038 (-) False LOC120570223
XR_005640980.1 other downstream 152682 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168581 other downstream 323747 19595929 ~ 19597521 (-) True G125326
TU168242 other downstream 1216591 18703095 ~ 18704677 (-) False G125090
TU168944 other upstream 535427 20459162 ~ 20461629 (-) True G125619
TU168946 other upstream 540374 20464109 ~ 20467185 (-) True G125620
XR_005641101.1 other upstream 940050 20863785 ~ 20863953 (-) True LOC120570677
TU169256 other upstream 1034588 20958323 ~ 20960064 (-) False G125842
TU169333 other upstream 1269173 21192908 ~ 21198041 (-) True ecrg4a

Expression Profile