RNA id: TU168789


Basic Information

Item Value
RNA id TU168789
length 4068
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G125480
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19930932 ~ 19937248 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgatttttaaatatttttattattctatGTGTTGAATTCATTCCATCAACTTTACATTGTTGGTCATAATGCATTGTTTcagattttcttcttcttttattgGACTGTAGTGACTCTGTAAAGGAATGGATACTATggtacattttaatttatttttagcaAATGTTCTGAAACCACATTTCAGAATTATTCTAATGCAAGCTCTGAGCTCATATTTAACGTCATATGGATATTGTGATTCTATACAGACAGAGGAATGCTGCCTAAACTTTTAATAGTGAGGAATGTGATGTGCCCAATGGAAGCTGTATCATATCATATGCTTTGATACACAAGACTATTTCAGCATAAAgcttatgtttttaaatgtgcctgTACACATGCAAACATGATATCCAAAAAGCCTCCTAACATTATATTTTAGGCATTTACGTATGTGCCACTTTGATCCAGAGCGATGTACAAATGAGCAGACGCGGTTTTAGGTTTTTTTCAAGAACACAGTGTGGCTCTTCTGGTCTTTTAACCACTATCAAACCCCTAAGCCAACTCTCCACAGCCCAACCTGTACACTCCCATTTTCACACACGTACTCTCCGGACTCTACGATCTAGACGGGCAGCAATACATGCATTCCTTTCAGGGGCACCAAGAAGGTTTCAGTGTTGCTTCCTCAGGGAATTGATTCAAGCTATCTGACCAAGGAATTTAACCTCTAACAAatatgcacgcatgcacgcatgcacgcacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagactttgaAACAAAAAAGGTTTGCAATAGATATTACACAAACAAGACATAAGTATGTAGCCCTAGTTGAACAAATGAAGACCCTACCCAGCTTTAACAATAAAAAGAAGTAATGGAGGGCTTCGGCTGAGGTACAAGAAGTAACAACTTACTGTAATGGTGAGCTCATAGTTTCAATTAGCTATGTTATTTAAAGGACAAGGCTGGCCATATTctgtattttccttttttttacaaTCCCATGTAAATACCAAATATATCACAGAGTTAGTCCTTCTGGTTGGTTTGGTTGGGAAACAATAGAACGTGAATCCTTAAAAAAACAGGGCATGAATACATAAAAAGGCCAAATAATTGGGCAATAACTGGGCACTGCAGTTTTTAGCAAATGTGGAGCGCGGGGCACAAAGTAACGCAGGGTTAAATGTAACACGGGTTTTTTAGGTGGCTCCACAGGGTAGAACTGGATGTGCTGGTCAGAAGTATTTTTTGATTTCTAAAGAGTGTGTGAAAGTCAGTTTATCTAATCTTATATTGCCTTGATCACAGTCCTCTTGGCTAAAAAATTGTGCCATTATAAAAGATGTGACCATCGCTTAGCAAGTGCTAGCCAGTCCTGAGGTAAACGCGTCACAGCGGGGCTAGTTGTAACGCGGTGTTACAACTAAGCCGCACCTATAATTACACTACAAATGGAGCCATTTTTAACTCACAAGTCTTTTATTTGCATTAATGTTTCAAAACCAATATTTTGAAAGTATTGAAGTACAGCGTGAATAACTATGTATTGCATTTCTTTTGTCCACAGaatgagaattttttttattattttttacattttatttattttttttattttttttcaatagatccataaattaaactattatattatgcagagtttagtaaataaGTGTTTTATACAGTTTTATTAGGTGTATAGCACAATGCTATTGAATTAtttgtgttaaatccaactttTTAACAAGTGTTACAACTAACCCTCTATCTGTTACAACTAACCCCGCATATGGGGCAGGTTGTAACATTTCACCTATCGCCACTCGGTGGAATTGTTCAAGAACGGTAGGTCCTATAAACAAACTTTCAGTGCACATTTGTAGCAGAGATATGTATGTTACTTGTATAAAAATATGAGCAGTAAACTCAAATGGTTTGAGAAATATTTAGCCAAAACCAAAAAGTGTTACTTTGTGCCCCGCGCTCCCCTACTTAAACCATGAGTAGTTAATAGTGCATTTTTTGGGGACTATTTATAGCTGCagatttaaacaaaataaactacagtgcccatgttcAGGTGACCAGTGCATGGGGCTCGTTAATGtgcttttaatagtttttagaCAACACTGCAGGGGTAtgctagcctgacgtggtcatactcagattctagtcagaatgtgagtctgaaaccgctccattgggctgtgattatggggcgtgttccaaccgaaccaggaaaaaaaatgcctctgcattcattggatggacctacaaccaatcagagcaacggaactcaactcaactgtcaacagaacCGTGTTTTAGAACTGATATagaacttatatatatatatatatgtcaatgaacagaactcaacactgtgtatcgtctccatagcaaccactctttgcacaatgcattcttctaacttccgacttttagacttttttgaagctggatatatcatttgttgcatgtaaatataaatgtggataacgttagtgatagtgacatgcctgctacagtcgcatttctagagatgaatcggcgaaaacacgttttatttctctgattcatggctttgttctaacgacgctctctctatctctctccaccatataacgctaccgtgctttcgggcagttgttgaggctcctccgctgaggattttaaaatgaatgcgctgtcgatatcgtctgtaacagacgcgatggtggaatctacacatctcaattctccagcggcagccacctgttgtaaacaaattcaacccaagcgttctttggtgacgtggttgattctgttactgttgatcatctgtccgacaatttgattggtccgaacagatcttGTTTGGGCAATAACTGCTCCTCAACGGagcaagtccagaccgaacttcctgacctcgaatgttgtgggcggggctaagttcggctggaaTCCAGGCTAGGGGTATGCTATATTAGACTTTGTCTACACATTTGTTAGTtgaatcaattcattgttggttttagtCTTTTCACGGGATTTGTTGAATAATAACCATATGATATCACCAGACTTATCCTTTAAGCACcaggttaaaaacaaacaagaaagtaTTTTGAGGACATGGAATATGTTGTAACAGCAAAACCACTGTACTTTAATTTGTCATACAGTGACTCTGCTGTGTGTTGCAAAAACGTGTGTCCATCGCCTCAATcaattacagagccagaaagaaaaacatggaCCGCTCAACATTTCCTCACTGATTCCATGTGAAGACAGCCTGGAGATTATATAAAAGTCAGATGCTGAGGAAGAAGAGCAGAGATGAATGTCGTGGTATTGTTGGCGTCCCTCAATAGGATTGTATTCGACATCCTACTGTATAGAGGTGTGTCAGAACATCTTCCCTTCTTACcaagatgatgatgaggatgatgatgatgacacagTGAAACAATTCTGCAAGGTCGGCTCTGAGAAGCACTGCCTCTTCTTTTTAGCCTCTGGTCTCATCTGAGAGATTAATCAGCTGAAAAGAAATGCATGGAGAGAGCAGGAAAAGTATGGCACAAAAAGACATCTCCTTTAACAAATCCGCAGATATGAGTATTGCGAGAGCCTAAGTGAAACCAGGGCTCTGTTCCAGAACAGGCTTTGACAAACACCATTTCCCATATGCCCTCGGCGTTTGTGGGCTGAACATGACGGCTTGACAGAAGAGATCCATGAGAGAGGACGTCAACGTTTAACTTTGTTAAGAGGCCCACTTATGCTTTTTGGGGTTCCCCCCGTCCTTTAGAGTGTTATATagtgttttgtgtatgtaataggtctttaaagtaaaaacaattaaacacatttCACGCCAAAGGGAGCTTTCACTCCCACAGAAAGGACTTATCCTTAACTGCCTGAAATGCCTCGCCTGCATTTGCGTCACAAATTCCTCATTTAGTGACATAACCAATTAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168758 lncRNA upstream 23110 19907587 ~ 19907822 (+) True G125465
TU168671 lncRNA upstream 31495 19899234 ~ 19899437 (+) True G125397
TU168639 lncRNA upstream 116664 19748066 ~ 19814268 (+) False G125369
XR_005641033.1 lncRNA upstream 128974 19792009 ~ 19801958 (+) True LOC120570225
TU168638 lncRNA upstream 178305 19748066 ~ 19752627 (+) True G125369
TU168793 lncRNA downstream 5949 19942230 ~ 19942847 (+) True G125482
TU168804 lncRNA downstream 56083 19992364 ~ 19993157 (+) False LOC120569357
TU168814 lncRNA downstream 79740 20016021 ~ 20016254 (+) True G125501
TU168817 lncRNA downstream 87982 20024263 ~ 20027981 (+) False G125504
TU168818 lncRNA downstream 87982 20024263 ~ 20027981 (+) True G125504
XM_039817407.1 mRNA upstream 1986 19924998 ~ 19928946 (+) True si:ch211-214p13.8
XM_039817408.1 mRNA upstream 1986 19924998 ~ 19928946 (+) False si:ch211-214p13.8
XM_039819005.1 mRNA upstream 10512 19916092 ~ 19920420 (+) True si:ch211-214p13.9
XM_039819006.1 mRNA upstream 10512 19916095 ~ 19920420 (+) False si:ch211-214p13.9
XM_039819007.1 mRNA upstream 10512 19916095 ~ 19920420 (+) False si:ch211-214p13.9
XM_039817228.1 mRNA downstream 8587 19944868 ~ 19953198 (+) True si:ch73-390b10.2
XM_039817229.1 mRNA downstream 32079 19968360 ~ 19993324 (+) True LOC120569357
XM_039818622.1 mRNA downstream 201023 20137304 ~ 20142499 (+) False abhd13
XM_039818623.1 mRNA downstream 201023 20137304 ~ 20142499 (+) False abhd13
XM_039818624.1 mRNA downstream 201272 20137553 ~ 20142499 (+) True abhd13
TU168229 other upstream 1226404 18703028 ~ 18704528 (+) True G125079
XR_005640963.1 other upstream 1913519 18010757 ~ 18017413 (+) False hnrnpa3
XR_005640989.1 other upstream 2050206 17860160 ~ 17880726 (+) False hoxd10a
XR_005640959.1 other downstream 238547 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other downstream 238547 20174828 ~ 20265148 (+) False myo16
TU168970 other downstream 555897 20492178 ~ 20521274 (+) False G125627
TU169140 other downstream 916808 20853089 ~ 20858910 (+) True mpc2b
TU169142 other downstream 923871 20860152 ~ 20865442 (+) True G125757

Expression Profile