RNA id: TU168860


Basic Information

Item Value
RNA id TU168860
length 1587
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G125543
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20147416 ~ 20149179 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGCACTTTTACCTGAGTTCCACTGTTCCTGCTCAACCTTAGCTCCTTTTGTCTCTCTGCTGCCTGGCAGGATATTCTGCCACTCTTTTCTACTTGTGGCCAACAAAGGGACAACAACCTCCACACAGATTCCTTGTGCAAGAACTGTCACTTTATTGAATCTGATTTTCTAATCAGTTAGACATATATAGGTAAACTTAGGTAAATCAGGTTATGGTATTCAGATGAATTATGTTCAAATATCTAAAATAACAAAGCAGTAGAGAACAATTTCAGTAATGTTGCTGCTATAGTAGGAAAGATTATTGATCAAAACATAAGAATTACACACAAGTAAGACATCTCTTTAAAGTCAGACAAAGTCAAGTCTCACATGTTACATCTTGCCATGTGTTGGTGATTAtttgagggaaaaaaaggactttattatattattacaatTTTTGTCATGATGTTTTGTAGAAATGAAAATAATACAGCTGTAGCTAGGTGGATGTATTTTTACAAGTAAAGACATCAACTCATAGTCCCCCGCATTTCCCATCAGGCTGAACAAGCTAGGAGTCAAACAGCCTGTCATTCAGGCGGTACTGAAATGTCTGCTTCCTGTATTCTTCTCACCTCATAGGTCAGGCGAGGACACCAGAACTGTGCCATTCTTGCTCCCATTATGGCACCTCTTTCCCACCACAACAGCGTCCCTGGGTCCGAAATGAGGTGACACGTTTTTAAGCCAGTTTCACAGCACCCATAAAGGTGGCATCTCCATATAGGGACACGTTGGCTGTGGAACGAGGGATCAGTAGCTCCAAGTGGTCCCCGACCTCCAGCTTCACAATACCTGAGGGATGCAAATGTGTTGTAAGGGTGAACGGGGTTCATATTCTGGATGCAGCGGAACAAGACCACATACTGAGGCTCGTCTCCCACCACATTCCTCTTCCTCCGGATCACCACGTGACCCATTGCAAAGGTGCTGTCCATGTAGTAGACCTGAGCACATCAGAAATACCGGGTTATGGTGGTATGGTATGACGCATGGGTGTTAACATGTATAAACAGTCAGGTGGGTGAAATATTATTTGCTACTTTGTTTATTGTGCAGGCATCATTTGcattgtctctgtctgtatcgGACCTTTCTTCAAGGTGCTGTCAACCAACTGCATGCTTAGATCAAGCACGCCCTTTTTTCTGCAATGCATGTAGACTTAATCCCCCTACTATGTCAAATCTGGCAAACAGACTAGCAGCACCTCCCTGTGGAAAAACTATGAAATGACAACAAACAGACCTACCTGACTGTACACAAAGTAGAAGCCCTCCTCTCTGACTAACATGCTGTCTCCGTCTTCCTCCAGGGCAGAGCCTCTCCTCAGCCCAGCCTGCCAGGGGATACCTGTGTGCGGCTCCGCGTTATATTCTGATCAAAGAAATAAGAATATATCAGAAAACATGTCAAAGCACTTAAAGCTAAACGTGTATCCCGACAGTCAACCTGTTTCGAATCAGTTAACAGAGTCTGATTGGGGTATCAGTTTATATGTTTATACATATTCTAGTGTGTTTTATGTACATCCTAGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168856 lncRNA downstream 2667 20143583 ~ 20144749 (-) True G125539
TU168838 lncRNA downstream 154095 19991408 ~ 19993321 (-) True G125524
TU168753 lncRNA downstream 248242 19898684 ~ 19899174 (-) True G125460
TU168752 lncRNA downstream 249034 19898002 ~ 19898382 (-) True G125459
TU168751 lncRNA downstream 249486 19897667 ~ 19897930 (-) True G125458
TU168871 lncRNA upstream 80906 20230085 ~ 20232060 (-) True G125551
TU168926 lncRNA upstream 181329 20330508 ~ 20330715 (-) True G125605
TU169011 lncRNA upstream 435469 20584648 ~ 20584932 (-) True G125658
TU169009 lncRNA upstream 435517 20584696 ~ 20584932 (-) False G125658
TU169059 lncRNA upstream 517867 20667046 ~ 20667405 (-) True G125694
XM_039817230.1 mRNA downstream 29106 20026079 ~ 20118310 (-) True LOC120569358
XM_039817227.1 mRNA downstream 188552 19953230 ~ 19958864 (-) True pdzk1
XM_039817226.1 mRNA downstream 203506 19934150 ~ 19943910 (-) False zgc:113337
XM_039817760.1 mRNA upstream 149902 20299081 ~ 20316292 (-) True irs2b
XM_039817761.1 mRNA upstream 152160 20301339 ~ 20316291 (-) False irs2b
XM_039817124.1 mRNA upstream 192107 20341286 ~ 20389402 (-) True col4a1
XM_039817125.1 mRNA upstream 322428 20471607 ~ 20476349 (-) True rab20
XM_039817242.1 mRNA upstream 342987 20492166 ~ 20498871 (-) True ube2al
TU168785 other downstream 223722 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168717 other downstream 351378 19790531 ~ 19796038 (-) False LOC120570223
XR_005640980.1 other downstream 378830 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168581 other downstream 549895 19595929 ~ 19597521 (-) True G125326
TU168244 other downstream 1442739 18703129 ~ 18704677 (-) False G125090
TU168944 other upstream 309983 20459162 ~ 20461629 (-) True G125619
TU168946 other upstream 314930 20464109 ~ 20467185 (-) True G125620
XR_005641101.1 other upstream 714606 20863785 ~ 20863953 (-) True LOC120570677
TU169256 other upstream 809144 20958323 ~ 20960064 (-) False G125842
TU169333 other upstream 1043729 21192908 ~ 21198041 (-) True ecrg4a

Expression Profile