RNA id: TU168946



Basic Information


Item Value
RNA id TU168946
length 851
RNA type TUCP
GC content 0.51
exon number 5
gene id G125620
representative True

Chromosome Information


Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20464109 ~ 20467185 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CAAGATCCTGATTGTGGGCCTTTTCCTGGCCCTCGAAGTACAGCAGACTGTAGCCATCCCACAGTTTCGACATGCCCACAGGACACATAGGTGTCTGCTCTGATTGACTGTGTTTCACCAGCAAGTAACCCACACTGACGCTGCGGCCCGGCATACCAGGTAACCCGCGGATACCAGGGTTTCCACGGTGACCTTCCATGCCTTGCAGACCGGGGTGGCCCATTTGTCCAAGCTCTCCACGAAATCCAGGCGTTCCTGATCTACCACCAATCCCCGGCATGCCCTTCTGCCCAATGGGTCCCATGAACcCTGTATCCCCAGGGGGGCCCTGTGGCCCTGTTTCCCCTTTGACCCCCTTTGGTCCTTGGATACCATGCGGACCTGGAGAGCCTCTCTCTCCTGGAATTCTGATGGGAATTGGAAGAGGACCCTGGTCCCCTGGGATCCCATGAAAGCCTGTTGGTCCAGTGTTTCCTTTTGGACCAGATGGCCCTCTTTCTCCCTTCACACCAGTAACACCAGGAACTCCCATCACTCCTTGGTCTCCTTTCACTCCTTTCTTCCCAGAGACACCATTTGGCCCCCTGTATCCAAAGGAACCTTGATCTCCTTTAAATCCTTTCCTTCCAGGGAATCCAGGAAACCCATGTACTCCTGGTACACCTTTTTCTCCAGGGGGAGCATCCACACCAGGAAATCCTTTGGCTCCAGGGAAACCTGAGAAACAAATCATTTAGggttaataaatatataaggtagtgctgtcaaacgattaaaatattgaatcacgattaatcgcattaatatcatagttaactcgcaattaatcgcatattttgatctattctaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU168926 lncRNA downstream 133394 20330508 ~ 20330715 (-) True G125605
TU168871 lncRNA downstream 232049 20230085 ~ 20232060 (-) True G125551
TU168860 lncRNA downstream 314930 20147416 ~ 20149179 (-) True G125543
TU168856 lncRNA downstream 319360 20143583 ~ 20144749 (-) True G125539
TU168838 lncRNA downstream 470788 19991408 ~ 19993321 (-) True G125524
TU169011 lncRNA upstream 117463 20584648 ~ 20584932 (-) True G125658
TU169009 lncRNA upstream 117511 20584696 ~ 20584932 (-) False G125658
TU169059 lncRNA upstream 199861 20667046 ~ 20667405 (-) True G125694
TU169070 lncRNA upstream 216710 20683895 ~ 20684410 (-) True G125701
TU169072 lncRNA upstream 219511 20686696 ~ 20686913 (-) True G125703
XM_039817124.1 mRNA downstream 74707 20341286 ~ 20389402 (-) True col4a1
XM_039817760.1 mRNA downstream 147817 20299081 ~ 20316292 (-) True irs2b
XM_039817761.1 mRNA downstream 147818 20301339 ~ 20316291 (-) False irs2b
XM_039817230.1 mRNA downstream 345799 20026079 ~ 20118310 (-) True LOC120569358
XM_039817227.1 mRNA downstream 505245 19953230 ~ 19958864 (-) True pdzk1
XM_039817125.1 mRNA upstream 4422 20471607 ~ 20476349 (-) True rab20
XM_039817242.1 mRNA upstream 24981 20492166 ~ 20498871 (-) True ube2al
XM_039817241.1 mRNA upstream 32268 20499453 ~ 20515203 (-) False ankrd10b
XM_039817240.1 mRNA upstream 32268 20499453 ~ 20515199 (-) True ankrd10b
XM_039818768.1 mRNA upstream 122603 20589788 ~ 20611661 (-) True cbsb
TU168944 other downstream 2480 20459162 ~ 20461629 (-) True G125619
TU168785 other downstream 540415 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168717 other downstream 668071 19790531 ~ 19796038 (-) False LOC120570223
XR_005640980.1 other downstream 695523 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168581 other downstream 866588 19595929 ~ 19597521 (-) True G125326
XR_005641101.1 other upstream 396600 20863785 ~ 20863953 (-) True LOC120570677
TU169256 other upstream 491138 20958323 ~ 20960064 (-) False G125842
TU169333 other upstream 725723 21192908 ~ 21198041 (-) True ecrg4a
XR_005640943.1 other upstream 988381 21455566 ~ 21461127 (-) False cracdla
TU169712 other upstream 1764900 22232085 ~ 22234857 (-) False LOC120569718

Expression Profile