RNA id: TU169072



Basic Information


Item Value
RNA id TU169072
length 218
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G125703
representative True

Chromosome Information


Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20686696 ~ 20686913 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


tgtagaattaaataaaatgcagtaaccaatcatttggagcaaattgtcatcactcaaatgtgcgtaagagtgcttttcagtgttcgtagattttgttcttagctaagaacaaatccaagttaagaaaacattagtgaatgccagaatcttcgtaaaaagttcgtaagaagggtttaagaacacatttcttcgtaagaacggttggtgaatgaggccca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169070 lncRNA downstream 2286 20683895 ~ 20684410 (-) True G125701
TU169059 lncRNA downstream 19291 20667046 ~ 20667405 (-) True G125694
TU169011 lncRNA downstream 101764 20584648 ~ 20584932 (-) True G125658
TU169009 lncRNA downstream 101764 20584696 ~ 20584932 (-) False G125658
TU168926 lncRNA downstream 355981 20330508 ~ 20330715 (-) True G125605
TU169078 lncRNA upstream 4984 20691897 ~ 20697240 (-) True G125708
TU169091 lncRNA upstream 23952 20710865 ~ 20713149 (-) True G125720
TU169175 lncRNA upstream 47696 20734609 ~ 20738288 (-) False LOC120570047
TU169178 lncRNA upstream 70794 20757707 ~ 20759225 (-) True G125784
TU169197 lncRNA upstream 172686 20859599 ~ 20859933 (-) False G125800
XM_039817757.1 mRNA downstream 21812 20649268 ~ 20664884 (-) True LOC120569729
XM_039819157.1 mRNA downstream 50091 20630090 ~ 20636605 (-) True u2af1
XM_039818768.1 mRNA downstream 75035 20589788 ~ 20611661 (-) True cbsb
XM_039817241.1 mRNA downstream 171493 20499453 ~ 20515203 (-) False ankrd10b
XM_039817119.1 mRNA upstream 28673 20715586 ~ 20719763 (-) True LOC120569295
XM_039818276.1 mRNA upstream 47637 20734550 ~ 20738320 (-) True LOC120570047
XM_039818778.1 mRNA upstream 88165 20775078 ~ 20792247 (-) False srpx
XM_039818777.1 mRNA upstream 88165 20775078 ~ 20792246 (-) True srpx
XM_039818302.1 mRNA upstream 108804 20795717 ~ 20809233 (-) True rpgra
TU168946 other downstream 219511 20464109 ~ 20467185 (-) True G125620
TU168944 other downstream 225067 20459162 ~ 20461629 (-) True G125619
TU168785 other downstream 763002 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168717 other downstream 890658 19790531 ~ 19796038 (-) False LOC120570223
XR_005640980.1 other downstream 918110 19753043 ~ 19768586 (-) False si:ch211-214p13.3
XR_005641101.1 other upstream 176872 20863785 ~ 20863953 (-) True LOC120570677
TU169256 other upstream 271410 20958323 ~ 20960064 (-) False G125842
TU169333 other upstream 505995 21192908 ~ 21198041 (-) True ecrg4a
XR_005640943.1 other upstream 768653 21455566 ~ 21461127 (-) False cracdla
TU169712 other upstream 1545172 22232085 ~ 22234857 (-) False LOC120569718

Expression Profile