RNA id: TU169175


Basic Information

Item Value
RNA id TU169175
length 1989
lncRNA type sense_over
GC content 0.42
exon number 5
gene id LOC120570047
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20734550 ~ 20738320 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTACAACAGGAAGTAAACAGGAACAATAACTGAACCTGACCGGTGATAATTAAGATAACATACCTCTGTATCGGTGTCAGTAACGATGGAGGAATATAACTCTGGAGATGAGGTTGTCTTCAATGCCGACGAGGTTAATATCTCCGTTAAAGAGAAGGTGTTATTGGTGGAACAGATTACAACCAGAGTAAAGTGAACCAGTGGACGGCCAGTATAGTGGAGCACTCCCTGACTCACCTGGTAAAACAAGGACGGCCGTTCAAATACATAGTAAACTGTGCGGTCATGCAGAAGAGCAGCGCTGGTCTCCACACAGCCAACTCCTGCTACTGGGACACTGCCACTGATGGAAGCTGCACAGTGAGGTGGGAGAATCGCACCATGTACTGTGTGGTCAGTGTGTTTGCTGTTGCTGTGGCGCtgtgagctgctctctctctctctcctaacACCATATTGTCTGAAGCTTGAAATGGCACGGTGACCAAGAAGCCACGAAGATCCTCTGTATGTACAAGTAGCTTATTTCTCCCTACAGGCTTGAACAACTTAATGTCAGGATAAGAATTGTGGTTTGCGAGTCGACAGCCTGCGTTTGTGTGAGAAAATGTTGCTTTGTCAGGACCAAAGTCAGAATTCAACGCTGAAGCAGTGACTTATTTGGTCAGCAGATGTTAAGAAgttaaaactaaatatttttgtCCCAAATTTTGTAATCTGTGTATAACGTAAAGCCTGATTagttttagccatgctagcagcaagACTCTGGGGATGGCAGTGTCAGTCAGTCCACCACtatggtccagactgaaatatgtcAACGACAATTGGATATATTGACATTACATTTGCTACACACATTCAAGCCTCCATCAGGATAAATTTTAATGagtttggtgatcctctgacttttcctctagtgttatcatcaggtcaaaattctGATTAGTCCAATACTTGGAACTAATTAAatttccatcagcctcagctctaCTTTGTGATTAGCTTGCTGACATTAGCCTTTAGCTTTAAGCACTGCTTTGCCGAAGTACGGCCTCAGGGAGCTGCTAGTATGGCTTTAGACTATTTTCATTTGTCTCCTTCAGTTCATTCCCTCATAAAACAGTTGCTGTAGTTTGGTATTTATGAAAAGTCTGACTGTTGTGTTTTAGTAGTGTAGTGTCCTCTGTGTCCCCCCTTTTGGGACAATGTGTCTGACTCCAATAAAAGACCTACTGTATATATCCCCGCGCATTTGTTAAATTGGTATTACATTGATCCTAAGCAAGAGCCAAATAGGATAAGATAAAGTCAGATACATTTGTTTAATCAGTCAAGAGTTTCAATACACAGATCTGTGGGATCACAAAGCACGCAGAGACGAAGTTTCCTTAGCAACAGACAAAAAGCTGGAGCTGGTCCACGTATTTCTAGACTGTCGGACCTCGTGAGCCCCGATCTATTCTTCCCCTCATCTCTTATACTTTCTTTCTTGGGCCCCCTCTTCTTCTCCCGCACAGGGACTGCTATCTTCACACAACACCTGCCAGGGTGGGGGCCACTGTATTATGTCTCGTCCTCATTTGCTCTCACTCGAAGCAGTACATTCTGTTCCTGTTTCATTTGTTATTATTGCTCAATGTACTTTGATCAAGGCCACTGTGACCCAAACTATCTTATATTTACCGCTTAAGCTAAACCAGCTGTGTGTCAGTTTCCTTTATTTGGGCAGCACACAACTCTGTTCAATAAGCGtacaccaaaacacacttgGTCTCTTATGGAAACCTTTTACATTCTTATTATATTTATCTGCAACTAGTAAGAACATTATTCTACAGTAGCTACCTGACTACTTGTATAAAGTGTCTCTACTAGTCGTTGCAGAATTTATATGAAAGTGTGTATTTCCAGGAAGATGGGGCTGTTTATTGGTCAGAAGGACTAATGCACTTTTTCTAGAACTTTTCCATAGAAATTCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169091 lncRNA downstream 21460 20710865 ~ 20713149 (-) True G125720
TU169078 lncRNA downstream 37369 20691897 ~ 20697240 (-) True G125708
TU169072 lncRNA downstream 47696 20686696 ~ 20686913 (-) True G125703
TU169070 lncRNA downstream 50199 20683895 ~ 20684410 (-) True G125701
TU169059 lncRNA downstream 67204 20667046 ~ 20667405 (-) True G125694
TU169178 lncRNA upstream 19419 20757707 ~ 20759225 (-) True G125784
TU169197 lncRNA upstream 121311 20859599 ~ 20859933 (-) False G125800
TU169199 lncRNA upstream 121311 20859599 ~ 20859991 (-) True G125800
TU169245 lncRNA upstream 172282 20910570 ~ 20910806 (-) True G125839
TU169259 lncRNA upstream 214644 20952932 ~ 20953578 (-) True G125845
XM_039817119.1 mRNA downstream 14846 20715586 ~ 20719763 (-) True LOC120569295
XM_039817757.1 mRNA downstream 69725 20649268 ~ 20664884 (-) True LOC120569729
XM_039819157.1 mRNA downstream 98004 20630090 ~ 20636605 (-) True u2af1
XM_039818768.1 mRNA downstream 122948 20589788 ~ 20611661 (-) True cbsb
XM_039817241.1 mRNA downstream 219406 20499453 ~ 20515203 (-) False ankrd10b
XM_039818778.1 mRNA upstream 36790 20775078 ~ 20792247 (-) False srpx
XM_039818777.1 mRNA upstream 36790 20775078 ~ 20792246 (-) True srpx
XM_039818302.1 mRNA upstream 57429 20795717 ~ 20809233 (-) True rpgra
XM_039817065.1 mRNA upstream 86486 20824774 ~ 20850992 (-) False dcaf6
XM_039817067.1 mRNA upstream 86486 20824774 ~ 20850991 (-) False dcaf6
TU168946 other downstream 267424 20464109 ~ 20467185 (-) True G125620
TU168944 other downstream 272980 20459162 ~ 20461629 (-) True G125619
TU168785 other downstream 810915 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168717 other downstream 938571 19790531 ~ 19796038 (-) False LOC120570223
XR_005640980.1 other downstream 966023 19753043 ~ 19768586 (-) False si:ch211-214p13.3
XR_005641101.1 other upstream 125497 20863785 ~ 20863953 (-) True LOC120570677
TU169256 other upstream 220035 20958323 ~ 20960064 (-) False G125842
TU169333 other upstream 454620 21192908 ~ 21198041 (-) True ecrg4a
XR_005640943.1 other upstream 717278 21455566 ~ 21461127 (-) False cracdla
TU169712 other upstream 1493797 22232085 ~ 22234857 (-) False LOC120569718

Expression Profile