RNA id: XM_039818276.1


Basic Information

Item Value
RNA id XM_039818276.1
length 2087
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC120570047
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20734550 ~ 20738320 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAGAAATGTCTTTTCTGTGCTCTTTGACTCTTTACAACAGGAAGTAAACAGGAACAATAACTGAACCTGACCGGTGATAATTAAGATAACATACCTCTGTATCGGTGTCAGTAACGATGGAGGAATATAACTCTGGAGATGAGGTTGTCTTCAATGCCGACGAGGTTAATATCTCCGTTAAAGAGTGTATAGAAGGTGTTATTGGTGGAACAGATTACAACCAGAGTAAAGTGAACCAGTGGACGGCCAGTATAGTGGAGCACTCCCTGACTCACCTGGTAAAACAAGGACGGCCGTTCAAATACATAGTAAACTGTGCGGTCATGCAGAAGAGCAGCGCTGGTCTCCACACAGCCAACTCCTGCTACTGGGACACTGCCACTGATGGAAGCTGCACAGTGAGGTGGGAGAATCGCACCATGTACTGTGTGGTCAGTGTGTTTGCTGTTGCTGTGGCGCtgtgagctgctctctctctctctcctaacACCATATTGTCTGAAGCTTGAAATGGCACGGTGACCAAGAAGCCACGAAGATCCTCTGTATGTACAAGTAGCTTATTTCTCCCTACAGGCTTGAACAACTTAATGTCAGGATAAGAATTGTGGTTTGCGAGTCGACAGCCTGCGTTTGTGTGAGAAAATGTTGCTTTGTCAGGACCAAAGTCAGAATTCAACGCTGAAGCAGTGACTTATTTGGTCAGCAGATGTTAAGAAgttaaaactaaatatttttgtCCCAAATTTTGTAATCTGTGTATAACGTAAAGCCTGATTagttttagccatgctagcagcaagACTCTGGGGATGGCAGTGTCAGTCAGTCCACCACtatggtccagactgaaatatgtcAACGACAATTGGATATATTGACATTACATTTGCTACACACATTCAAGCCTCCATCAGGATAAATTTTAATGagtttggtgatcctctgacttttcctctagtgttatcatcaggtcaaaattctGATTAGTCCAATACTTGGAACTAATTAAatttccatcagcctcagctctaCTTTGTGATTAGCTTGCTGACATTAGCCTTTAGCTTTAAGCACTGCTTTGCCGAAGTACGGCCTCAGGGAGCTGCTAGTATGGCTTTAGACTATTTTCATTTGTCTCCTTCAGTTCATTCCCTCATAAAACAGTTGCTGTAGTTTGGTATTTATGAAAAGTCTGACTGTTGTGTTTTAGTAGTGTAGTGTCCTCTGTGTCCCCCCTTTTGGGACAATGTGTCTGACTCCAATAAAAGACCTACTGTATATATCCCCGCGCATTTGTTAAATTGGTATTACATTGATCCTAAGCAAGAGCCAAATAGGATAAGATAAAGTCAGATACATTTGTTTAATCAGTCAAGAGTTTCAATACACAGATCTGTGGGATCACAAAGCACGCAGAGACGAAGTTTCCTTAGCAACAGACAAAAAGCTGGAGCTGGTCCACGTATTTCTAGACTGTCGGACCTCGTGAGCCCCGATCTATTCTTCCCCTCATCTCTTATACTTTCTTTCTTGGGCCCCCTCTTCTTCTCCCGCACAGGGACTGCTATCTTCACACAACACCTGCCAGGGTGGGGGCCACTGTATTATGTCTCGTCCTCATTTGCTCTCACTCGAAGCAGTACATTCTGTTCCTGTTTCATTTGTTATTATTGCTCAATGTACTTTGATCAAGGCCACTGTGACCCAAACTATCTTATATTTACCGCTTAAGCTAAACCAGCTGTGTGTCAGTTTCCTTTATTTGGGCAGCACACAACTCTGTTCAATAAGCGtacaccaaaacacacttgGTCTCTTATGGAAACCTTTTACATTCTTATTATATTTATCTGCAACTAGTAAGAACATTATTCTACAGTAGCTACCTGACTACTTGTATAAAGTGTCTCTACTAGTCGTTGCAGAATTTATATGAAAGTGTGTATTTCCAGGAAGATGGGGCTGTTTATTGGTCAGAAGGACTAATGCACTTTTTCTAGAACTTTTCCATAGAAATTCTGGCATACTTGTGTAAAACTAAGTTCATGAAGGCTctttaataaattaatttattggAACGTC

Function

GO: NA

KEGG:

id description
K10420 DYNLT; dynein light chain Tctex-type 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169091 lncRNA downstream 21401 20710865 ~ 20713149 (-) True G125720
TU169078 lncRNA downstream 37310 20691897 ~ 20697240 (-) True G125708
TU169072 lncRNA downstream 47637 20686696 ~ 20686913 (-) True G125703
TU169070 lncRNA downstream 50140 20683895 ~ 20684410 (-) True G125701
TU169059 lncRNA downstream 67145 20667046 ~ 20667405 (-) True G125694
TU169178 lncRNA upstream 19387 20757707 ~ 20759225 (-) True G125784
TU169197 lncRNA upstream 121279 20859599 ~ 20859933 (-) False G125800
TU169199 lncRNA upstream 121279 20859599 ~ 20859991 (-) True G125800
TU169245 lncRNA upstream 172250 20910570 ~ 20910806 (-) True G125839
TU169259 lncRNA upstream 214612 20952932 ~ 20953578 (-) True G125845
XM_039817119.1 mRNA downstream 14787 20715586 ~ 20719763 (-) True LOC120569295
XM_039817757.1 mRNA downstream 69666 20649268 ~ 20664884 (-) True LOC120569729
XM_039819157.1 mRNA downstream 97945 20630090 ~ 20636605 (-) True u2af1
XM_039818768.1 mRNA downstream 122889 20589788 ~ 20611661 (-) True cbsb
XM_039817241.1 mRNA downstream 219347 20499453 ~ 20515203 (-) False ankrd10b
XM_039818778.1 mRNA upstream 36758 20775078 ~ 20792247 (-) False srpx
XM_039818777.1 mRNA upstream 36758 20775078 ~ 20792246 (-) True srpx
XM_039818302.1 mRNA upstream 57397 20795717 ~ 20809233 (-) True rpgra
XM_039817065.1 mRNA upstream 86454 20824774 ~ 20850992 (-) False dcaf6
XM_039817067.1 mRNA upstream 86454 20824774 ~ 20850991 (-) False dcaf6
TU168946 other downstream 267365 20464109 ~ 20467185 (-) True G125620
TU168944 other downstream 272921 20459162 ~ 20461629 (-) True G125619
TU168785 other downstream 810856 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168717 other downstream 938512 19790531 ~ 19796038 (-) False LOC120570223
XR_005640980.1 other downstream 965964 19753043 ~ 19768586 (-) False si:ch211-214p13.3
XR_005641101.1 other upstream 125465 20863785 ~ 20863953 (-) True LOC120570677
TU169256 other upstream 220003 20958323 ~ 20960064 (-) False G125842
TU169333 other upstream 454588 21192908 ~ 21198041 (-) True ecrg4a
XR_005640943.1 other upstream 717246 21455566 ~ 21461127 (-) False cracdla
TU169712 other upstream 1493765 22232085 ~ 22234857 (-) False LOC120569718

Expression Profile