RNA id: XM_039817779.1


Basic Information

Item Value
RNA id XM_039817779.1
length 3197
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC120569741
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20979001 ~ 20986633 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGTACAGTattggatgatgatgatgaattgGTCAGGATGTCTGTAGTATTATAAAGTTAACACATTCATTCCACATCCTACTCCATATTACAAGGCAGGTCACGTgagtaaaataatatttatgCCACTATGTATCTGCATGCTGTGCCATCTTTCTAAAAAGATCACAACTACTAGCCAacataaatgtttattttgtacataaaagttttattttaggGGGTTTAGGAGGTAAGACACCATTCATGGAACACAAAATCCACAGTTCAAatcctttgtttttgtcactagTTTCCTTAAAACTTTTACAATAAACTATTAAATAAATGCATGAAAAAAGGTCCAGAAATACTTAAAGCTGATTTTATAACATTTATGTAGTATACCATTGAGAATGACCAAAAAAAAGGGGAGAACTCCAGCTGTAGCTGTAGCTACCATTTAAGGATAGGTTCATGTTTTTCAAAACTGGTCAGGTGCCCAAGGCCTGTAGATTTAGTCTCCCATTGCTTCCATTGGCAGCACCTTAGGAAGAGATCTTTCAATGGCCAGTATGAACAGGAGGACTAATGACAGCGAGCTAAACCTGTTTCAGTGTACATATGTGCACTTTACTGTTCTCAAAGACAAACATGAAAAATGTGGCCATATCCTTTAAGGACGATAATGGCATGTCCTCAGTATCGTTTCTGGGAATTTGGTTGATGTAACAATCTAAGAATTAGTTTATATTCTACAACTTGGGGCAAAAGGGCAAAAATTAAACCAGCATTAACTGATTTTGGGCCACTCGTGGGCAGCGAAAACATCAATATAAAGATATGGATTATAATCccttttaaaacacattaaaataagACTAGTAAAAGGGATTTAGTTTTCTTTATGATAATATTCCTGACAGTGTGGAGACAGCTTTGGAATACTATTGAGATCATGTAGATGagaaattatatatttaaacagTCTAAACAATATACTCTCTTGGTAGTCAGTTAAATATTTCTTAAGGAACATTAAAGTGAGGGTAATTGGACTTTGGATTTCTAAAATCCTGTCTCCAATCCTGGAATTAATGCTTTACCATTTACAGGGAATGGGGAAACCTTTATTTTGTTAAGAGTGATATGCAAAAAGGCATAAAAGCATCCAATTGTTTTCCATGCAAATAAAGCACATACCTGTGGTTGTTACCTGAGTGTTATGTAGTCTAGCCCCTCCTCTCAGTGAAAACTCTAAGGTGAGTCATTGGAAACTCAGACCGCTTTATTTACTTACCTTGACAGCAGCTCTTTTCCAAGGAATAGAAATGAAATAGGTGCCTCTGTGCAGGTGGTTTACAACCTTGGTGGACTACTTTACCTGCAGCAAATGACACACAAtggaaatgaaaggaaatgctTCTCAACCTCTTACATGTAATAATGGCAGTGAAAGCAGGATTGACCCCTATGGCTTTGAGAGACGTCATGATTTTGAATCCTACAAGGAGATGATGAATGAGTatgtagctgtcctcaacagAAGGTCGATGAGATGGTCCAAGCTCCTTCAAGAGAAACCACACGTGGAGAAGAACTTGACAGTGAAAAGGTATGTGCGTAAAGGTGTGCCTAACGAGCACCGTGCCAGGATTTGGATGGCAGCCAGTGGCGGACAGGAACGACTGGAGAGCAACCCAGGTTATTACCAGTCTCTGCTGGCCATGGAGCATGACACCAAGTTGAAGGAAACCATCCATACAGACATGCATAGGACCTTTCCTGACAACGTCCTCTTCCAGAGCAAAGCAGAACCGAGCCTGCAGAGGGCTCTGTACAATGTGCTGCTTGCCTACGGACAACATAATAAGGAAGTTGGGTACTGTCAGGGCATGAACTTTATTGCAGGCTACCTCATGATCATCACCAAAGATGAAGAGAACTCCTTCTGGCTCATGGATGCATTGTTGGGCAGAATGCTCCCAGACTTCTACAGTCCAGCCATGATGGGCCTGAAGACTGACCAGGAGGTTCTTGGGGAGCTGGTGAAGGCTAAAGCTCCTGCAGTAGGACAGCTCATGGCCCAGTATCCTGGCATATGGACACTGGTGGTGTCACGCTGGTTCATCTGCCTCTACATTGACATACTCCCAATTGAGACAGTTCTGCGGGTCTGGGATTGTCTTTTCTACGAGGGCTCCAAAGTTCTTTTCCGTGTTGCTCTGACTCTCATCATTCACCACCAGCCGGAAATCCTGCGAGCTCGCTCTTTGACTGATGTGTGCGAGTGCTTTAAACAAATTTCCTGTGGAGCTTTTACTCTGGACTGCCACACCTTCATGCAGAAAATCTTCACAGAACCTGGCAGCCTGTCGATGGCAACTATTGATAAACTCAGAGAGAAATGCAGACAACGAATACTGGAGGAAGAATCTGGACGGCCATAAAGTTTTGGATCCACCATTTATGCCCGTCTAAATGGATTTCTAAAACTAACAGCTTTAATTCAGTGTTAAAGAATAACACTGGAACAAATAACTACCGGTATTACCGAATGGACTTCTGGTGGCTTTTTGTTTTGCTTCTGTTTTAAGTTTTCTATAAAGGAGAACCTTGTCCTTTGCAAATGGTCCCATGTTCTGCAGAATATTTCTACTTTAAGTGTGATCATCAGAAGTGATGCTTTGTAAAAATCCTTTTTGCACTACAGTATACGTTGTAGCACTGTGGGACTGATGCAATTATGTTTGTTATTCTGGAGAAAAATACTTACAGAGAATgtggtctcgcattgccagacatatctcaacagcactgtggagtaagtCTGGCTCCTCCACACATACGTTGCAGGATAGGGgaaatgcatttctttaaaccaatcacaatcgtcttgggcggcgctaagctccggtcGCAGAGACAGTGACGCTACAAAAtggtctctggaaggaacttgtttgggtgGAACATTTGGACCCCgaataaagaaaatgccacatataatataaaattaagttaactgttcacacaattcagtaacgtgagctatttaaattagctggattcatggttaaacataatttgctcttaccagtcaGTGTATTGCCCTGTGTTACTCCATCCACAGCAATCCTGCCTTTCtttgtaaatatttaaaatcattCCCGAAAGAACctagcaggcctgccttgttgcatgatccaaattttatt

Function

GO:      GO:0005097,GO:0032851

KEGG:

id description
K19953 GRTP1, TBC1D6, MSB3_4; TBC1 domain family member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169262 lncRNA downstream 2109 20974232 ~ 20976915 (-) True G125848
TU169254 lncRNA downstream 18960 20953661 ~ 20960064 (-) True G125842
TU169255 lncRNA downstream 18960 20954005 ~ 20960064 (-) False G125842
TU169259 lncRNA downstream 25446 20952932 ~ 20953578 (-) True G125845
TU169245 lncRNA downstream 68218 20910570 ~ 20910806 (-) True G125839
TU169271 lncRNA upstream 9859 20996492 ~ 20998787 (-) True G125852
TU169277 lncRNA upstream 14676 21001309 ~ 21004378 (-) True G125855
TU169318 lncRNA upstream 161856 21148489 ~ 21148994 (-) False tmtops2b
TU169341 lncRNA upstream 222153 21208786 ~ 21209743 (-) True G125905
TU169358 lncRNA upstream 290289 21276922 ~ 21279827 (-) False c12h2orf49
XM_039818219.1 mRNA downstream 11388 20960073 ~ 20967636 (-) True LOC120569994
XM_039817255.1 mRNA downstream 45646 20927503 ~ 20933378 (-) True gpa33b
XM_039818910.1 mRNA downstream 51700 20911765 ~ 20927324 (-) False ildr2
XM_039817782.1 mRNA upstream 336 20986969 ~ 20992931 (-) False dcun1d2a
XM_039817781.1 mRNA upstream 336 20986969 ~ 20991556 (-) True dcun1d2a
XM_039817783.1 mRNA upstream 25978 21012611 ~ 21017468 (-) True mettl21cb
XM_039817222.1 mRNA upstream 32953 21019586 ~ 21023880 (-) False LOC120569351
XM_039817220.1 mRNA upstream 32953 21019586 ~ 21023879 (-) True LOC120569351
TU169256 other downstream 18960 20958323 ~ 20960064 (-) False G125842
XR_005641101.1 other downstream 115071 20863785 ~ 20863953 (-) True LOC120570677
TU168946 other downstream 511839 20464109 ~ 20467185 (-) True G125620
TU168944 other downstream 517395 20459162 ~ 20461629 (-) True G125619
TU168785 other downstream 1055330 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU169333 other upstream 206275 21192908 ~ 21198041 (-) True ecrg4a
XR_005640943.1 other upstream 468933 21455566 ~ 21461127 (-) False cracdla
TU169712 other upstream 1245452 22232085 ~ 22234857 (-) False LOC120569718
XR_005641037.1 other upstream 1545001 22531634 ~ 22582407 (-) False si:dkey-100n23.5
TU169814 other upstream 1638548 22625181 ~ 22629099 (-) False katnal1

Expression Profile