RNA id: TU169808


Basic Information

Item Value
RNA id TU169808
length 2567
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G126267
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 22616311 ~ 22620608 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTTAATGTTTTTGCTACACAGCTGCTACAGATCGAAAAACATGAGCAAATCTCTAAATTACTTTATAGCCAAAGTACTGATCATACTGTCAAGAATCAATTATTTTGCGAGTATCAAGTTTTTCTAATCTTGTAGCTCACATCACAGGTTTAATATATCAAAACAATAAtagtttgacaaaataatcGCAACTCATAGTCAATTTACAAGCTTTTACTGCGCTTTTAACCCTGTCACAAAGTCTTAAATGGAGATGGTTCAGTTGTTAGAGATGTAGTGATTATGATGTCATCCATAGCACCTTTAAGATTTCTTGTTCACAGTGCTGAGTTCATTCTAAACTCAGATGTCAACAGatccatctccatgacaacagaGCAAACTCAATCTGCGGACGAAGACGGCGTGACACGGTTAAAAGCTCTGGAAAAAGCTGGGCCTTCAGTTGGGATTGTTTTTGGTCAAGCAACTATTTCCAAGAATTTACTTCCatactatatttttatttattcctttctttctttctatctctcaATAGCTTCAGCATCATGGAATCATTTTTTGTTTGCTTTGAAAATGCGATTAACAAGATAGTTAAAAACCTCACTCACTTTTGGGTGATCAATTTAgtaattttattaaaaagaacCATTAAGTAGGCAAGATTTTAGGCAAGAATTGACGGTATGCTTTAATAAAATATTCATGGGTCCAGGAGCCATGTTCTTTTAGCTTgcctacatttgtttttctccactgaactaaaattaaaaacaaattaaaaccaacaaacaaaatacaaacacataaTTAGTCGCTACATAAAACACAAGACATTGTGGTTCTTCAAGTGGGTTCAGTCAGTAGTACGCACATCCTCaaggaaaaacattaaaagtgcTCAAACATACAGTTCTTTAAGAGAAAGGGCCTCGTGCAAGAATCCAAAGTACTGACAGATTTGTTCTGTGGCACATGCAAGTGATTTAAGGAAACTTCTTGCATTTGCCAGAAATCTAAATTAGAATACCTTCATCTGAATGATCATGACCATCACTGCAGGTTTTACTGGCATACAGTATATTGGCATGTCAACCTAACGATTCAGTATCTGTTTGGTGACATCTGCCTTAAGGTTTTTAAGCAGGACGCTTTCCCTGTGAACATCCTCTGTTGTTGCAgctgtatttacatttttttttatcatttcagGTCTCTTAACACGACTTTGACTGCTAAACTTGTTATGTTTTCGACTGCTGATTTCTGACAGCAGGATATGAAGCTCAGCGGTGTGAAATTCTTTTTAATCTTTGGAATTTTCAATGAAACTTGAAACCCAGAAACAGGGACTCTTTTATAGCAATTTTAGGGGCATGGATTAACGCTAACCTACTTGTAAACAGTTGGCATTCATCAGGTTGAAACGGATAATTTACGAGCAAAGCTTATTTGGTGAAGTGGATGTGGAACACTTGTATAACAAGCTAACGTAATAAAACTAGAGTGCATTTCCTGGTCTACCTGTATCTAATAGGCTACTTTTTACATTAAAAGTTCCCCCTTTCTTTCTCAGGTCACTTAAGTCAGTCAGCAGCTGGGCAATTGATAGTCTCTACATGGACAATTGTGCTGAAGCAACAACGAGGGGACAGTATGCGCAAGGGCAGGAGTGCTTTCTCTAAGGCACCAGTCTTCTGATGGGAACTTGAGCCCCTGTATAATCTTGATCCCTGATGTGCTGCCTGGTTCAAACACTAGAGTTCACTCCACTCCGTGACACACACTCCTTAGTCCCTTGTCTTCAAGGCTTTCATCACTTTTAAAGTCCTGGTCCCTCTGGGTCTAAATGGTACCGTTCTCTATACTGACCCAAACTCAGCCATCCAGGCTACGTATTTCTCCAGGTCTGCAGAAGAGACAGACTTTGAGATCTTCTTGAGTGTCAGGGTGAAGTCCTCCATGGTCACAGGCATCTGCAGTTCGTCTTTGGACAGAGCTCGTATCTCCTCGGGGCTTAGGCCTTGGATTCGACGACGCATTGCCATCATGGACGCATCCCTGATGTACATGTAAAGACAGATGCAAAGaggtagactgggtaaacccagcccgatctgccggtgatttgatttcgccctgcagctcaggctggaaacctgtacgttatTCTATCCTGCTTCCCTTACAAATCTGCGTGGGACCAAttacaaactggcttatccacctggcgcgctattggcgggatTAACGCGATGACGATagaagcgacggcaagcagcttcttctttacattcaacatggcggcagCAAcacgttgatgccgctgtcgctgctgttttaaaagatttcaaaaaggcaagttttctctgaaaacggaacagaaacttgccctggaacaattcctacaaaagaaggatgtgtttgccttactaccgacccggatcgttggtctgattggttgaaggactgcCCAATTGCgtgcagagtcatttgaactatgcccgttgatcacacctcttgtgcagtagaaaatacagagcagactccccagaccaATGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169782 lncRNA upstream 78798 22535131 ~ 22537513 (+) True G126246
TU169701 lncRNA upstream 170190 22445328 ~ 22446121 (+) True G126175
TU169695 lncRNA upstream 230557 22385529 ~ 22385754 (+) True G126169
TU169686 lncRNA upstream 258642 22356094 ~ 22357669 (+) True G126162
TU169684 lncRNA upstream 263953 22351027 ~ 22352358 (+) True G126160
TU169833 lncRNA downstream 20549 22639470 ~ 22639762 (+) True G126280
TU169843 lncRNA downstream 38596 22657517 ~ 22658892 (+) True G126290
TU169856 lncRNA downstream 115139 22734060 ~ 22738653 (+) False fbxl3a
TU169931 lncRNA downstream 151789 22770710 ~ 22770920 (+) True G126352
TU169937 lncRNA downstream 178980 22797901 ~ 22798312 (+) True G126358
XM_039817981.1 mRNA upstream 266252 22332905 ~ 22350059 (+) True tfg
XM_039817983.1 mRNA upstream 266252 22332905 ~ 22350059 (+) False tfg
XM_039817982.1 mRNA upstream 266252 22332905 ~ 22350059 (+) False tfg
XM_039817980.1 mRNA upstream 283510 22330500 ~ 22332801 (+) True jagn1a
XM_039817979.1 mRNA upstream 286679 22316100 ~ 22329632 (+) True col8a1a
XM_039817880.1 mRNA downstream 49385 22668306 ~ 22730423 (+) True mycbp2
XM_039817885.1 mRNA downstream 49385 22668306 ~ 22730423 (+) False mycbp2
XM_039817890.1 mRNA downstream 49385 22668306 ~ 22730423 (+) False mycbp2
XM_039817892.1 mRNA downstream 49385 22668306 ~ 22730423 (+) False mycbp2
XM_039817886.1 mRNA downstream 49385 22668306 ~ 22730423 (+) False mycbp2
XR_005641000.1 other upstream 927509 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 988859 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 1750869 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 1757401 20853089 ~ 20858910 (+) True mpc2b
TU168970 other upstream 2095037 20492178 ~ 20521274 (+) False G125627
TU169945 other downstream 188272 22807193 ~ 22815102 (+) True G126363
XR_005641105.1 other downstream 2248400 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 3011186 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 3020885 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 3498067 26116988 ~ 26129879 (+) True G127165

Expression Profile