RNA id: XM_039818251.1


Basic Information

Item Value
RNA id XM_039818251.1
length 5854
RNA type mRNA
GC content 0.50
exon number 15
gene id arhgap20
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 26201162 ~ 26259576 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTCCGATGAGGCGGACCGGAGTCGCAGCGCTCAGACtaaaaagacacacagagaggagcGCAGTGCACAGGGttcacctcctcttcctccggATCAACACCTATCCATCATGGATTCTCCCCGGGCTCTTGCCCTTCTCTTTACCGGATAATTTTGGATTTACACTCGTATCATGGGAATATACTGTCTGCGCGCTTGGCCCCGTGGATCTATACAGTCTTGATGGAAAACATGTCACCGCAGCAGGGGACCATGGGACAGAATAGGTCCGACTCCCTGACGGGAGAGAGCAAAGCACTTCCCGACAACAAAAAGATGAAGACCTTGGCCCAGAGACGACAGTCCGCTCCCTCGCTGGTCATCAGCAAAGCCCTTACCAGATCGAAAAGCACATCCAGGGAAAGCTGCCTGACGCTAGTCAGCCCAGGGTCCTGTTCCCTGGTCCAGGCCTTCCTGGCTGAGTGTCCACGCCGCCTATTCCTGGGTCATGCCCAAACGCAGCTAAAGACGGGCCTGCAGACCCAGGAGAGACACCTCTTCCTCTTCACTGATGCGCTGCTCGTCGCCAAGGCCAAGTCTCCCACTCACTTCAAAGTGAAGGCCCAAGTCCGAGTGTGTGAAATGTGGACAGCCAGCTGCATGGAGGAGGTGTGTGAGGGAAGCACCAACCCAGAGAGGAGCTTCGTAATGGGCTGGCCCTCCTGCAACTATGTGGCCACCTttagCTCTGAGGAGGACAAGAACAAGTGGTTGGCGCTCATCAAAAGTCGGATAATTGAGGGGAAAGAGAAGGATGACCCCAAGACCATTCCTCTGAAGATATTTGCCAAAGATATTGGGAACTGTGCATATGCCAAGACACTTGCGGTGAGCAACACTGACAGCACCACTGATGTCATCCGCATGGCTCTGCTGCAGTTTGGCATATCGGGCTGCGTTAAAGATCACAGGTTGTGGGTGAACTCCAGTAAGGACGAGCCTCCATACCCTCTCATTGGCCACGAGTTTCCCTTCAGCATTAAGATGAGCCACATACGGGATGGCGGGAGCAGTGGTGGAGGACTgggaggaggagcagggagGGATCCAACGAGTCCCACAGACTGTCCAGGGGTGCTGCTGTTGGACCAGTGTCTCCCCCCAGACACCCAGTGCCAGTTTATCCTCAAACCCAGCAAGATTGCCCCGGGACAGACTCCACTTATAGAGCCTGGTCAGCAGAAGTCTTTTAAGAGGAAGAGGTCTCTGATCAACTGGCCTTTCTGGAGAGGCTCCAACACACAGCTGGACGGTCTGCCCCTGTCCCCGACCTCGCCGTCCCCCACTCAGGGACGGCTGTTCGGACGACCCCTGAGCTCGGTCTGCTCTCCGGACACCGGTCTGCCCAAGCCTGTCATGGACATGTTGGTGTTCCTGTACCTGGAGGGGCCGTATACCAGGGGCATCTTCAGGCGGTCAGCTGGGGCCAAAGCTTGCCGGGAGCTTCGGGACAGACTGGACAGTGGAACTGAGGACCCGGAGATCACACACCAGTCTGTGTTCGTCATCGCTGCTGTCCTCAAGGACTTCCTGCGAAATATCCCGGGCAGTATGCTGTGTGTGGATCTGTATGAGCAGTGGATGGATGTGAtggaaggggagggaggggaagagCGGATACAAGCTGTCCAGAGgttGCTTCACCTCCTGCCCAGTGAGAACCTACTTCTTCTGCGACATGTGATCGCCGTGCTGCACTGTATCCGAGGCAACGCCCATGACAACCAGATGAACGCCTTCAACCTGTCCGTTTGCATTGCTCCCAGCATGCTGTGGGCGCCAGCACCAAGCACCCCCGAGATGGAGGGGGAGGGCACCAAAAAGGTGTGTGAGCTCATTCGCCTCCTCATAGAGAACTGCAGCAGCGTCCTGGGAGAAGACGTCACCTCGCTGTTCAGAAGCTTCAGCCAGAAGAGCAGCTGCAGTGACCACGGATCAGATGTGTCGTCCTTCCAGATGAACGACTCGTCCTACGACAGTCTAGAGAACGAGCTGAACGACGACCCTGAGTCTCCCTTCCAGGAACAGCTGCCCCTTCGTAACAAGGACAAGCCGGACAGCCGCAGCCGTGACTCCGTCATCACCCTCAGTGATTGTGACCCTGATCTCGACCCTGAGACCGATCTGCAGCTGCCCCCGCTGGCCAGACCCAGGAGGTTCAGCCCTGCAGTCCGACAGCCTCGCACCCGCCAGGCCAACGGCCTGTCGCAGGGTCCACGGAGGCTGAGGAGGAGTTCAGAGCCTGCGTTAGCCGTGGGAAGCACACCGCCCTTGGGCACAGTGACGGTTCAAGCCAAAAAGCACCACCTACCAGTAAGGAAGGCTAGCTATGATGCCGCCATGGAGGGGGAGAGGGTGGTGGACGAGGTGTTTCTGGAGCATGGGCTGAGTGGGCTGCAgctgaaggaggaggaagaggatagGTGTGAGAAGGGCGGAGCCAAAGTCCAGAATGGCGGGCGGAGGAAGATGAAGCACGCCCCTCCGCCTCCGTTGCGACTGGATGCCAGCTGTTCCAGTCTGTCTTCACCTGCGACCTCACCCACAGGCTCCTCCCTCAGCTCTTTAGACTCCGCCTTCTCACAGTACTCTACTGACTACCCCACCAATGGAGCGATTTCATTGGCTGAGCCTGCTCCTCTGTCACCCAGGGACTCACCCCCTCAGAGGGAAGCTCCGCCTCATTGGCCACAGCCCACCCAGGCCCATCGGACCAGCGAAACCCCCCCTCACCCTCATGGTCTCCACCCTAACACGTGGCTCAAGAAGGGCCGCCGCCTGTCACTAAAGCAGGCTGATAATGGGCACTCAGAGGAGGACTTGCCTGTGGCAAACGGGAAAACCCACCCAACCAGTAATGGCTGCTCTGTCGATGCCCCTGAGGCCACGGTGACGAACCGAAACTGCCAACGGAGATCCAGCAGCCCTCCGTCCTACCAGCAGgctctgctgcagctgcagcacaGCCGCTCCCCTTTCTACAGGGGGACAGAGAAACCTCTGACGGTCAGAGAGCTGAGGAAGCTCAACAACCAGACCCGCACCTACAGACCCCCGGTCCCAGCCTCCCCTAACGGCCCCAAACCGCAAACAGGAAGTGAGGTCACACAGAGGCTGGCTAGAAATGAGTTCGTGCAGCCCCCACAGGGTGTTTTCTATGGACAGAACGCCACGACTCTGGTCCTCCAGAGGCAAAAGTCCCACCCTCTGACTCCGGCCACGGAGGGACACAAAGGGCGGAGGACTCTTCCCCGCAGGGCGTCGGAACCTTCCGAGGTCACTGCAAACTCTAACCCCTCCTCCAGCCTCACCCTGGACAGACCTCGCACTTCTAAAGGTCAGCCCCAAGATGGCGGCCTGAGAGTGTCAGAGGTGGAGCCCAACCACGCCCACCGCCCCGAACCACGCTTCTGCCTGTCTCCCTCCGCCACCCGGGCTGTAAGAGACTACTTTTCCTCCCAGGGTCAGGAGGATGCAGATGTCTGCCTGCGGAGGAGTCAGGAGGTGGCGCTGGCTATTGTGCAGGGGCAGAGGGAATGGCAGAGCAGGCAGTGCAGCGACCCACGGGTGGACGACTTTGACCAGCTTTTTTTTGCAGAAGAGTCATACGTGTAAATAAGAAGTGTCTACAAACAAACTGTTTGAGAGACTGATTTTTATCCGATATGTTCACTTGTAAATGCCTGTCTTAATATTCCTTCATATACAGTGTTTTTTGTTCTGGCAGCCGATACAAAAAGGTGTTGCAGTTTACTGTTATGGTACAGTATATCCAAGGTTTTAGAGTTTAAAAGGTACAGATGAACTTCCTGCTTCTACGTTCCACCTCCTTGTTGTAGGAAACTGTTAAAATATATTCTGATTCCTCATCCACCATGGAGCTCTGACAGATGTCTGGCAAACAGTAGATTGTAAGGTTTAAAGTTGTTGGTTATAATCCACaatattttaagtttaaaagCTATTTCATGTATTTGACAATGACATTGTCAACCCTCTGTAACCCTGCAGTTGGGATTCTcaaatcattatttattaaatagtgaTGGTTGATTCTGTGAATTCATAACAGAGAAGATGCAGAGAAGTTTAATTGGACATCTGGAGCAAAGGATTACAGCTGATGTCAAAACAGTTCAGAGTTACAATTCTTGTGCCAAAATCTGATTCCTCCGAGAGATATTTTTCTCTGGCAGTGTGTCCTTGTTTGCCTTTCGATAACGTTTCGTTGCTTTTTCAGAacctaacaacaaaaaaatgatgGAAGAGGAGTTCTTTAGTAATGAAGAGAAAGGCCAAAGAAGCCTAtttgtaaaatgaaaatgtatttttagacTGGTGGGAAACCAAGGCCATGACACATTTTTGTTGTCCGTTTTTAACAGCAAAACATATCAAGTTTTATTAAAATTTGGACAAAATTTGATTGCACATTATCATGCCCATCGCAGTTTTCTTGTGCAGAAGAAACAAATCAAggacaccattttttttttccgggGATACAAATCTCGGTACAACAAACGTAAGCGCTGCATGACAAGACTACTGTGACTGTTTACAAATACTCTGGACATGCTTGTAGCTCCATCCACAACACCTGGGATGTTTGCTGGAGTGCCAGATGAAGGTTTGGGCACACTGTACATACCTAAAACTTCTTAGACTGTCATAATAACATCTGTACTTTTCATGACAAATTGCATCTGTAAAGTGAAACCTTTTTCCCCAGAGAGTGAAGTGTTTGTCTGTCTAAATCAGTGAATCAATAGGGCCGGTATTTATTCATATGAGCCGAGTTTCCAGACACACAGCACGCAGTGTTGTCCCCTGTAGCTCTGGTTTATATCTCTGTGACCTgggtgggaggggaggggaggggagggcaCGGGACGGGggaggaagaaagaagagaaactaTCAATGTGTGTGCGTGAAAGAAAGTCAGAATGTTGTTGAATAGGATGTGATTATTGATGCCGTGTGCTGAACAGGAATGTGAGAAATTGTGCCATTGAAGGAGAAATATCCTTTATTCTTGCTTGTACATGTATAGCACTTCATTATTCTCAACAAGAAACCCTTTTAGTTTCACTAGAATAAGGGCACAGGAGGAcacagccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagttgaATGGACCACAGTTTTTCCAACTGTTGCGTGTTTTGTCCATGATAATGATAATTTTGTTCCATTGCTGCCGTCATTGTAGTGCTAATTTCTTAGGTGACACTTAACAATAAATGACCCTATTTCACTGTGCATTAATTTACTTTGAATTATGTAAATTCATACTTATAGATAATATATTCTTAGCACAATGTAAGCGCAGTTTTCCTAAGTGTCAGCATGGTGTTACTATGAGCTTAACATAGCTTTTTCACAGGATCCCACACTGCAATAAGGTCATTGTCCAATTTAGACAGTCTCAAAATGTACTTTATCCTGTATTATTATAAGTGTTATCTCCATTACAGTGAATTGTGTTCAACGTGTATAGTTCTGCATATTTATGatacagaaatataaaaatatatataaatatattatccTGTTACTTTggtatgttgtgttgtgtgagaGAATCAAAAGTGTATTTTTGTACATGCcaattctgctgctgctgtctctaTAGAAAGtatatttgctacagaatgcacCATTTGTATATTGTGTACATCTGATGTCCAATGTACATGAcaacaaaatgtaattaaatgttGCTCTTGTGAAAAATA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171145 lncRNA downstream 93594 26107365 ~ 26107568 (-) True G127180
TU171070 lncRNA downstream 252755 25924907 ~ 25948407 (-) True LOC120569246
XR_005640850.1 lncRNA downstream 271878 25927956 ~ 25929284 (-) False LOC120569246
TU171055 lncRNA downstream 377269 25820709 ~ 25823893 (-) True G127109
XR_005640985.1 lncRNA downstream 399185 25799098 ~ 25801977 (-) True LOC120569833
TU171176 lncRNA upstream 56203 26292422 ~ 26292746 (-) True G127205
TU171292 lncRNA upstream 205569 26441788 ~ 26442436 (-) True G127299
TU171308 lncRNA upstream 244102 26480321 ~ 26484045 (-) True G127313
TU171312 lncRNA upstream 267384 26503603 ~ 26505068 (-) False gjb8
TU171338 lncRNA upstream 423791 26660010 ~ 26668274 (-) False lats2
XM_039817795.1 mRNA downstream 25969 26127650 ~ 26175193 (-) True LOC120569748
XM_039817794.1 mRNA downstream 26234 26128610 ~ 26174928 (-) False LOC120569748
XM_039817796.1 mRNA downstream 67236 26127650 ~ 26133926 (-) False LOC120569748
XM_039818855.1 mRNA downstream 412607 25781815 ~ 25788555 (-) True nms
XM_039818538.1 mRNA downstream 427379 25744895 ~ 25773783 (-) True LOC120570276
XM_039817853.1 mRNA upstream 139180 26375399 ~ 26395638 (-) False cenpj
XM_039817852.1 mRNA upstream 139180 26375399 ~ 26395638 (-) True cenpj
XM_039819026.1 mRNA upstream 259664 26495883 ~ 26502958 (-) False gja3
XM_039819027.1 mRNA upstream 259664 26495883 ~ 26502958 (-) True gja3
XM_039819028.1 mRNA upstream 259664 26495883 ~ 26501114 (-) False gja3
TU170982 other downstream 461036 25725074 ~ 25740126 (-) True G127046
TU170950 other downstream 499611 25699927 ~ 25701551 (-) False G127032
TU170948 other downstream 500924 25698728 ~ 25700238 (-) True G127032
unassigned_transcript_609 other downstream 967151 25233930 ~ 25234011 (-) True trnas-gcu_4
XR_005641099.1 other downstream 1317841 24883203 ~ 24883321 (-) True LOC120570672
TU171901 other upstream 2737897 28974116 ~ 28974542 (-) True G127800
TU171990 other upstream 3055651 29291870 ~ 29294679 (-) False LOC120569310
TU172027 other upstream 3109860 29346079 ~ 29346889 (-) True G127903
TU172051 other upstream 3151757 29387976 ~ 29393143 (-) False G127923
TU172053 other upstream 3151851 29388070 ~ 29388572 (-) True G127924

Expression Profile