RNA id: TU171264


Basic Information

Item Value
RNA id TU171264
length 1985
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G127273
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 26503559 ~ 26505543 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttgtttttactgatttatgaaaaaaaaggtcTCACAAAGCAAAAGGACTTCAAGGATCAAAGTGCGGGTGTGATAAAAACATCTCAGGTACAAAACACAAGTACAACAAATGTAATATCTTCATTTCTTGCTCAGAAAGCTGTTTGTTCATTAGTATGTTGTTTGCTGTTAAAAGCATCCTACTAAAACTAGATTGTGGAAGAAATCTgaatagaaaaatgttttaaaagaatCTTGGGACTGGAGTGATCAGGCTCGTCCCTTAAAAACACATAGTTGCTATGATAAATGTtgcatcaaaatgtcatttcgGCTGTTACAGAAAGCAAGAGGTCAAAGGTGAATGCAGAGCAGATAtacaaaacaatcacaaataTTGTTCTTAAATCTGCATACAGATTACTTTGTCTGCGAAGATGCATGACTTTGGATCTTTGGTCAACAATATTGTGGCCCacttaaaaaaatgtcagttcACTTCATGCTGTAACTCCACAGAACTGCATCAGTTATGTAATGTAAATATATGACTTCAAGATTTTCTTTTTAGAGTTTGCTGTCTAAACTGCCTCAACATACCCTTTTACAATCTCTCCTAATCACTGTTCGCTGTTCACAGAagctgatttattatttttaacaacACAGATGTAACTAATCCAACTCAGTTATTCCTGGATGGGAGGGAGGacaaagacattttcaaattgaGATCGGACCGTAGTTCCTAACGTTAAGAGGGCGAGCAGTGATTAGTGTGGTGGCTAAAATAAGGCACATGCTGAAAGCTGATACAGCCAGCTGGGGTCAGTACACACTGCAACAACACCACAAGTCCAAATAACATACCAGGTCTGGGCTGAACAGGACAGCTTCTGGACGATGTTTCAAAAAGCAGGATTAAGAGCATTGACGTAACTTGAATGTTAAGGAATCGGCTGATGATAATAACAAAGGTCCTTCAGAAGCAAACCCATAACACGTTTTGTAGTTGTCGGTCTAACTTGACAATCCTGCTTTTTGAAATAAACTCTTGTAGGGTAAAAACGTCTTCAGGGGGGggcaaaaacaaatgttacaaaatgaaaaaatattgaGTCAAATATTCATTGATTCATATCTAGAAATCACTAAAAGTGTGACAGATTTGGTATTTTTCTAGTCAAGCATCTCGACTGGAGTCAAAAATAATGTTCTGTATGTTTCAACACCACTCAGTATTTCTGAATTCATATTTCTACAAAATCATATTCGTCTGCCTCTTTTTTTAGACTTTGAGAACCAGTTTAATTAAGCAATATGATTAGTTGGGGAGATTTCTAGCACTTGCTGACTgcacaataaaaacatattgcttaaaacacattttacacaccAAACATACATATTTTTGCCACATTCCCAACACTTCAAATACTTTCAGTTCAAGTAAAAGACAAAAGACATTGTGATTTGATTGAACAGCAAAGAGCATCACATCTTCTAAACCACTGTGGTGTGGTAGGTAAGATTCCATTATGTTATATAAAAGTCTATCAGCATAATCTTGTGCAACACACTTCTCAGtaaatataaacacaaacatGAAAAACTCTAGCATCATTTATAAAAAGTTATTCAACTATGGGTTTTTAAACTTAACTTCATGCTACAGTCACTTGATTCAACACAGCAGGATCATAAAAACTCATCTGCTTTTATCAATTACTGTAACAACCACATTTAAAGTCAAATCTCAGCTCTTGCATGTAAAGTAGTCACTAAAAACGTAATGACAAAGGCACTTTTTATTGCTTCACTTTTCACGATTTAATTTGTTCTCCTGTCTCTTCTTCAACACCAAACAAATCCTTCAGGCTTAGAGGAAGGTGTTTGCTCTCCTAGAGGTTCCACTTAAAACCACTAGATGTCAGTGTAGACTCATTCTTGTCTGGTTCAAAGCATTCAGGCAACCTCAAACTGTgaccaaaaaaatgaaaaccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171249 lncRNA upstream 19510 26477206 ~ 26484049 (+) False zmym2
TU171247 lncRNA upstream 20327 26477206 ~ 26483232 (+) False zmym2
TU171246 lncRNA upstream 61261 26441396 ~ 26442298 (+) True G127264
TU171182 lncRNA upstream 146650 26352887 ~ 26356909 (+) True G127209
TU171175 lncRNA upstream 210770 26292443 ~ 26292789 (+) True G127204
TU171257 lncRNA downstream 4632 26510175 ~ 26518288 (+) True G127270
TU171330 lncRNA downstream 130688 26636231 ~ 26640460 (+) True G127332
TU171331 lncRNA downstream 136772 26642315 ~ 26642650 (+) True G127333
TU171334 lncRNA downstream 153995 26659538 ~ 26660321 (+) True G127336
TU171359 lncRNA downstream 207824 26713367 ~ 26717381 (+) False LOC120569906
XM_039818026.1 mRNA upstream 19471 26449443 ~ 26484088 (+) True zmym2
XM_039818027.1 mRNA upstream 19471 26450409 ~ 26484088 (+) False zmym2
XM_039818320.1 mRNA upstream 64274 26411477 ~ 26439285 (+) True mphosph8
XM_039817854.1 mRNA upstream 92798 26396070 ~ 26410761 (+) True ttf2
XM_039817850.1 mRNA upstream 129655 26314786 ~ 26373904 (+) True rnf17
XM_039819109.1 mRNA downstream 30410 26535953 ~ 26560881 (+) True ift88
XM_039819110.1 mRNA downstream 30410 26535953 ~ 26560881 (+) False ift88
XM_039819111.1 mRNA downstream 30411 26535954 ~ 26560881 (+) False ift88
XM_039819113.1 mRNA downstream 30412 26535955 ~ 26560881 (+) False ift88
XM_039819114.1 mRNA downstream 30413 26535956 ~ 26560881 (+) False ift88
TU171231 other upstream 85892 26411511 ~ 26417667 (+) False mphosph8
TU171128 other upstream 373680 26116988 ~ 26129879 (+) True G127165
TU170822 other upstream 844833 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other upstream 844833 25639806 ~ 25658726 (+) False cacnb4a
XR_005641105.1 other upstream 1636120 24867321 ~ 24867439 (+) True LOC120570682
XR_005641067.1 other downstream 1883107 28388650 ~ 28409839 (+) True prkag3b
TU171918 other downstream 2523359 29028902 ~ 29041224 (+) True G127814
TU172007 other downstream 2790941 29296484 ~ 29299361 (+) True LOC120569952
TU172063 other downstream 2953601 29459144 ~ 29459978 (+) True G127932
TU172070 other downstream 2962583 29468126 ~ 29474550 (+) False G127935

Expression Profile