RNA id: TU171589


Basic Information

Item Value
RNA id TU171589
length 388
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G127542
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 27650396 ~ 27650783 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgaaatcaggcattttgggccgcaacaatctcaaaaaaaggccgtgaaatcctggagggactgcccttgtgtgttttATCATGTGTTATGATGctcattcaccagtgtttttttgttgttgttgtggtgcgcataggctactcctgattttgtcatcccatctcttatatgctgtgtctctatgatcctctcctgtcctattcatggttccctactcgtggacattgcgccgtcatcacgtgctgtagtaggggggccgccttgataatcctgcataggggCCCGGTGTTGGCTAGTTACACCACTGACCTCCTCTCTTTTGTCATTCTGGGCAGCATTGATGCAGGAATACCCTCAACTCTGTGATGTCACCTTGCAGATTCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171588 lncRNA upstream 23776 27626408 ~ 27626620 (+) True G127541
TU171585 lncRNA upstream 59178 27590977 ~ 27591218 (+) True G127538
TU171535 lncRNA upstream 121908 27431551 ~ 27528488 (+) True G127498
TU171518 lncRNA upstream 286657 27363533 ~ 27363739 (+) True G127484
TU171465 lncRNA upstream 421932 27180500 ~ 27228464 (+) False G127433
TU171621 lncRNA downstream 287911 27938694 ~ 27943622 (+) True G127570
TU171674 lncRNA downstream 577313 28228096 ~ 28228450 (+) True G127613
TU171692 lncRNA downstream 692709 28343492 ~ 28343798 (+) True G127623
TU171740 lncRNA downstream 734634 28385417 ~ 28385642 (+) True G127665
TU171784 lncRNA downstream 883160 28533943 ~ 28534172 (+) True G127701
XM_039817406.1 mRNA upstream 62807 27581078 ~ 27587589 (+) True LOC120569540
XM_039818323.1 mRNA upstream 531046 27088995 ~ 27119350 (+) True gdap2
XM_039819010.1 mRNA upstream 742879 26867195 ~ 26907517 (+) True tbx15
XM_039819011.1 mRNA upstream 742879 26867196 ~ 26907517 (+) False tbx15
XM_039819031.1 mRNA upstream 790393 26831993 ~ 26860003 (+) True wars2
XM_039818619.1 mRNA downstream 154142 27804925 ~ 27910727 (+) True LOC120570327
XM_039817381.1 mRNA downstream 313638 27964421 ~ 28011644 (+) True LOC120569522
XM_039817382.1 mRNA downstream 375752 28026535 ~ 28078578 (+) True LOC120569523
XM_039818007.1 mRNA downstream 441655 28092438 ~ 28282323 (+) True kalrna
XM_039818008.1 mRNA downstream 441655 28092438 ~ 28282323 (+) False kalrna
TU171231 other upstream 1232729 26411511 ~ 26417667 (+) False mphosph8
TU171128 other upstream 1520517 26116988 ~ 26129879 (+) True G127165
TU170822 other upstream 1991670 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other upstream 1991670 25639806 ~ 25658726 (+) False cacnb4a
XR_005641105.1 other upstream 2782957 24867321 ~ 24867439 (+) True LOC120570682
XR_005641067.1 other downstream 737867 28388650 ~ 28409839 (+) True prkag3b
TU171918 other downstream 1378119 29028902 ~ 29041224 (+) True G127814
TU172007 other downstream 1645701 29296484 ~ 29299361 (+) True LOC120569952
TU172063 other downstream 1808361 29459144 ~ 29459978 (+) True G127932
TU172070 other downstream 1817343 29468126 ~ 29474550 (+) False G127935

Expression Profile