RNA id: TU172007


Basic Information

Item Value
RNA id TU172007
length 1853
RNA type TUCP
GC content 0.42
exon number 2
gene id LOC120569952
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 29296484 ~ 29299361 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGgcattaaaataaacaaacagatatAACTGTGATGTGTCTTGGCATTCAGTTGTTCAAAGTTCAAATTAAAGGGATCAGAAATTAGCAGACGCTGTTTACTAAAATATCAGGCTAGAGCACAAAGCTTCATTTGTCAGCCTCACCTACCGCTTACTGTGGTTTAGGTGCATTTCCGGGCATTGCATATATAACAATGAACATGGGGagtaaatgtaataaaatagacCTTTAGCCATTTGAAATGCGTTATCCCTATTCTTAAGACAGCCACGGTCTGAACTTGTGCCACATTCAAACAAAGCATGACAAATCCATTCAGACAGACTCTGTTTTTTCCTGTCACCCTATTCCTCTCCAGTCTGAGAAATATATAAACTGCAGctcagttcttctcgctcctctctcctgcCTTGTGTCTTCCACCCATTTCCCCTCCCTTTTGTTCTGGATCATGATGGCACAAATGAAATTAACAGCGATCGCAGAGCTGCTTATTCATCAGCTTCCAGATAATTTAAATAACAATACCCTGTTACAGCGCGTATAAAGTATAAAAGCCGCCTGGCAGCCACAGGTTGTTGGACAGATTCCCACAAACACAGATCATCAAACATGGGCAAGGTACGTAGAGAGTAGACCAGAAAACAAGCACTTTTCAGTTTAGGAGGCACTCGTAAACAAGTGGAAGAAATATATAACAGAAGGACATGAAGCCATCTAAGCTTACAAAGGTACATTTTTAAATAGACAAATCAGTTCatactgttttttcattttgttttctacaGATTATCTTCTACGAGGACAGGAACTTCCAGGGTCGTTCCTATGAGTGCATGAGCGACTGCTCTGACATGACCTCCTACCTGAGCAGGTGCCACTCCTGCAGGGTGGAGAGCGGCTGCTTCATGGTCTACGAGCGCCCAAACTACATGGGAAACCAGTACTTCCTGAGGAGAGGAGAGTACTCAGACTACTTGTCTTTTGGCATGAGTGACTCAATCCGATCCTGCCGTTTAATTCCTCAGGTATGCAAGGATTTTGAAAGGATAAATATTAATAGGAAATGAGTCATCTTTaatggagaggaggaagagttaTGACCAAAacgtcattaaaaaaaacttatccAGGCCCTCAAGGTtggttacaaaaaataaaaggccCTTAATTCATTTGGCAAGACATTTAAAAGTACATCAACGCATGTCGGCTTGAGCTGTCAGAGACTTCTGAGTGCCTGAATATAGttttatgacgttttttgtCATAACTCCTCTCCGTcaattgctatttttatttatttccctgcTGTGCTCCTAAAATGTGTGCTTGAAAGTAAATTGTTCCAAAAACAGCATggcattttaaacacattttacacTGACAGCAGGAAAGTTGCAATCTAAATTCTTCCTAGGCTGACGTCCTCCTTTTTGTATTCATCAACAGCACAGAGGCCAGTTCAGGATGAAGATCTACGAGAGAGAGAACTTCCAGGGCCAGAGTCATGAGCTGATGGAGGACTGCGTCAACATCCAGGACCGTTACCGTATGAACGACTGCCAGTCCTGCCACGTGATGGACGGCCACTGGCTGATGTACGAGCAGCCCAACTACAGAGGCAGGATGATGTACCTGAGGCCCGGAGAATACAAGAGCATGAGAGATGTGGGATTCAGCGGCATGAAGCTTAGCTCTGTCAGGCGTATAATGGATTCCTGTTGaagcagagaaaaataaatctgtTGAATAAAATCAGGAATCAAACGTCACCTTGTCATTGCGTCTTGTGTGATGGGCTTTGTGTCTGCGAGTTAAATCTGCATAACTGATCTTTAAATTGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171989 lncRNA upstream 2926 29292980 ~ 29293558 (+) True G127872
TU171907 lncRNA upstream 211824 29078731 ~ 29084660 (+) True G127805
TU171908 lncRNA upstream 211824 29078731 ~ 29084660 (+) False G127805
TU171910 lncRNA upstream 252263 28984700 ~ 29044221 (+) True G127806
TU171883 lncRNA upstream 357994 28938151 ~ 28938490 (+) True G127784
TU172015 lncRNA downstream 94822 29394183 ~ 29398629 (+) True G127893
TU172018 lncRNA downstream 156642 29456003 ~ 29456885 (+) True G127896
TU172065 lncRNA downstream 162551 29461912 ~ 29462923 (+) True G127934
TU172069 lncRNA downstream 167783 29467144 ~ 29469501 (+) True G127935
TU172098 lncRNA downstream 186870 29486231 ~ 29489650 (+) True G127942
XM_039818102.1 mRNA upstream 403864 28804245 ~ 28892620 (+) True raph1a
XM_039818104.1 mRNA upstream 403864 28804245 ~ 28892620 (+) False raph1a
XM_039818105.1 mRNA upstream 403864 28804245 ~ 28892620 (+) False raph1a
XM_039818103.1 mRNA upstream 404817 28804244 ~ 28891667 (+) False raph1a
XM_039818651.1 mRNA upstream 558926 28735598 ~ 28737558 (+) True LOC120570350
XM_039818174.1 mRNA downstream 6465 29305826 ~ 29307000 (+) True LOC120569951
XM_039818175.1 mRNA downstream 6483 29305844 ~ 29307000 (+) False LOC120569951
XM_039818177.1 mRNA downstream 10993 29310354 ~ 29311230 (+) True LOC120569953
XM_039818178.1 mRNA downstream 16715 29316076 ~ 29316987 (+) True LOC120569955
XM_039818182.1 mRNA downstream 46652 29346013 ~ 29346913 (+) True LOC120569959
TU171918 other upstream 255260 29028902 ~ 29041224 (+) True G127814
XR_005641067.1 other upstream 886645 28388650 ~ 28409839 (+) True prkag3b
TU171231 other upstream 2878817 26411511 ~ 26417667 (+) False mphosph8
TU171128 other upstream 3166605 26116988 ~ 26129879 (+) True G127165
TU170822 other upstream 3637758 25630107 ~ 25658726 (+) False cacnb4a
TU172063 other downstream 159783 29459144 ~ 29459978 (+) True G127932
TU172070 other downstream 168765 29468126 ~ 29474550 (+) False G127935
TU172092 other downstream 176751 29476112 ~ 29478950 (+) True G127938
TU172154 other downstream 322331 29621692 ~ 29622929 (+) True G127971
TU172113 other downstream 327163 29626524 ~ 29632382 (+) False LOC120569632

Expression Profile