RNA id: XM_039817063.1


Basic Information

Item Value
RNA id XM_039817063.1
length 3793
RNA type mRNA
GC content 0.52
exon number 21
gene id dcaf6
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20824774 ~ 20850992 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTATCGCGTTGTTTGGACACAGCTGACCGCTGCCTGCTAGAAGAAATAAACCAGGCTAGGCTAGCAGGACAGATAGTTAGCAGCGCATAGAGCAGCAGTACAGTGAATGTAAACTCATGAGGACAGCGGAGACAGGACAGGAGCGAGTCTTTCACCTCCAGCGATGCAGACGTTGAGTGTCGcagccagctaacgttagcgctgtCCCGACACACAGGGACTGAGCTCCATGGCAAAACCCAAGCAACGATAGATAAAAGGCGACATCAACAGGAACGGGTTAGCTTAGTTTCAATGTTATTGTTAATTAAAGCCCACATATGGTCACAATGTCCTGCTCTGGAAACCTGGTTTGGGATGTAAATAAACGTTTAATTGGATACAACGAGCCTAACACCATCAGGACCAACTATTTAGgtaGAAGAGAATTTGTCCAGAGACTGAAACTTGAAGGGACACTGAATGTACATGATGGCTGTGTCAACACTATATCTTGGAACGACACAGGTGAATATCTCCTGTCGGGGTCAGACGACACCTTTTTGGTTATCTCCAACCCGTACAACAAAAAGGTCAAGAAGTCCATACGTTCAGGTCACCGGGCGAATATCTTCAGCGCTAAATTCATGCCCCACACTAACGATCAGGAGATCATCTCCTGCTCCGGAGACGGCATCATCTACTACACCAACACCGAGAAGAGTCCTGAGCACAACAGACAGTGTCAGTTCACCTGCCATTATGGAACAGCTTATGAGaTTATGACGGTACCAAATGACCCCTACACGTTTCTGTCGTGTGGGGAGGACGGCACGGTGCGATGGTTTGACCTCCGCACGAAGACCAGCTGCACTAAAGAAGACTGCAAAGATGACATCCTGATAAACTGTCGAAGGGCAGCCACCTCTATATCCATTTCTCCTCTGGTGCCGTACTACCTGGCTGTTGGCTGCTCTGACAGCTCAGTGCGGATCTACGACCGACGCATGCTGGGCACCAGAGCGACAGGTAACTACATGGGCCGGGGGACGACAGGCATGTGCGTGAGGTTTGTTCCCGCTCACCTGTCCAACAAGTCGTGTCGCGTGACTTCTCTGTGCTACAGCGAGGACGGTCAGGAGGTTCTGGTCAGCTACTCGTCCGATTACATCTACCTGTTCAACCCTAAAGATGACCAGGCGCGAGAGCTGAAGGGCCCGtctgaggagaggagggaggagctgAGGCAGCCTCCAGTGAAGCGCCTCCGTCTGCGAGGTGACTGGTCTGACACTGGACCCCGAGCTCGTcctgagagtgagagagagagagacgGAGAGCAGAGCCCAAACGTGTCTCTGATGCAGAGGATGTCGGACATGTTGTCTCGTTGGTTTGAGGAGGCCAGCGAAGCTCAGGGCAGCAGAGGAACTCGACCTCAGACACGAGCCAGAGGAACAGCTGTTGGTCCAGAGGGGGCCTCGAATACTCCAGCTGCCCCTGCCGTTGGCTCCAGTCAGGAGTCCGGCGTCCCAGAGAGGCCCGTGGGCTCAAACGGCCCGGAGGTACCTGCTGGTCCTGTCGCCGCCGCTGCCGCCATGCCTAAAtccacttcctcttcctcctcagggTCGTCATCAACAGTCACAGCACCTCCTCCTTCCAGCTCCTCATCAGTGGAGAGCTcggccccttcctcctcccccctcaccTCCTCGCCTGACTCCGAGCAGAGGAGTCAGCCCGACACGGCCGGGacctccacccccacccccaccccaacgCTCACGCCCACGCCAGAACCCACTCTCTCAGAGTACGGTCCTAATCGGCTGCCCATAAGTATAGTGTGTAGGCGTTTGCAGAGGTTACTTCGGCTGGGCGACCCACCAGGACAGGGTCAGCGAGCTGCccgttcttcttcttcctctgcaGCCCCTGAGAGACAGTCAGAAAgagctgctactactgctgctgccgctGAGATGCATCCCCCTACAGATTCCCCCTCATCTGTGGTTAACAAACAGCTGGGATCCATGACTCTTGATGAACAGCAGGGAGCAGCAGAAGCTGTAGGTTCACCTCCTGATCAACCTGCTTCTGTACCAGTCAGCACCAGCGCTCCCACCACCTCCACCTCGAGCGGTACCAGTCGACCCAGCGGAGCAGAGCCAGTCCTCAGCCTACACTACAGTTCAGAGGGAACCACCACCAGCACCATCAAGCTGGACTTCACTGATGAGTGGAGCAGTAGCACATCCAGCTCTTTGGGCAGTGGAGGTCCCAAAATATCTGAGGCTGTGGCTGCACAGAGCAGAGAGAGTCTGTCGACGGAGATTTCAGTGTCAGAGCAACCTCCCTCTGTGTCCTCGGGGCAGCAGATTGTCACGGCTGCCTCCACAGAGCCGCCATGTGGCGCCTCCTGCTCCAGTGCTGCCGGCAGCTCGTCGGCTCAGGCCCCAGTGGCGAGCTCCTCTCAGGGGGACACTGTGACTTCTTCGGCGGTGGAGAGGAGTCAGCCGGAGGGTATGGAGGACACTTCAGGAGGCTGCAGGAGAGCGGAGCCCAGAgcggaggagggagaggagggccAGAGTCAGCCTGCCCGGGCCAACCAGGACTCTGATGACAGTGACGACGATCCTATTCTCATCCCATCAACGAGGTTCAGAGGTCAGGGTCAGAGATTAAATTCCAGAGGATCTGCAGTAGGAGATAGGATGATCAGACGCTCAGCAGCCGCTCGTATCCAGGAGCTGTTTCGCAGGAGGAAAGAACGAAGGGAGATGGAGGAGAGCGAGACCCAGAATATCAGGAGACCCTCAGTCAAGATGGTCTATAAAGGCCACCGCAACTCCAGGACAATGATAAAGGAGTCCTGTTTTTGGGGCAACAACTTTGTGATGAGCGGCTCGGACTGCGGCCACATCTTTATCTGGGACAGACACACGGCAGAGCACCTCATGTTGCTGGAAGCGGACAACCACGTGGTGAACTGCCTGCAGCCGCACCCCTACGACCCCATTCTGGCTTCTTCAGGGATAGACTATGATATCAAGATTTGGTCGCCACTGGAACAGTCAGCATCTTTCAACAGAATCCTGGCTAATGAGgtAATAACTCGGAACGAGCTTATGCTAGAGGAAACTAGGAACACAATCACAGTCCCGGCTTCTTTCATGCTCCGAATGTTGGCCTCCCTAAATCACATCAGATCAGatCGACTAGAAGGTGATCGCTCTGAAGGTTCAGGACAGGAAAATGAGGATGAGCAGTAGCCTGCTGgcaatgtattttaaagaaaacatttttttcttgctGTATAGCACTTGAAAAAAACCTGAGATTTGTACAAGTATAGTGTAGAATACTAATTAGTGTCATTTCTAGCCCCcctgtgtttttttaagatgaCTTTCTTACTGATGTTTCTGTATGAGGATAAACTACATCTGTGTGAATGCAACAGGCAAGGATGTcagtaaatatatattaagTGTGAGAATAATGGTGGCTGGTGTGCAAGGATGTTAAGTGCAATATTATTTTGTTAGGAGAAAGTGAGCTTTGATCAGTGTTAACGTGtgacattttgaatttgtaGCACAAAGCTAAAAAATGTTGATGTCCTGCTCCGGCAGTTGCGCATGTAAACAAGGACTTTAAGTAAAAACATACTTGGAGAatgctttaattttattgttaaagagagaaaaaaagaagttgtGGTTCTTCTCCCCAAAGGGACATGCTAACATTATAACCTTTTACATAATTTGGAAGAAATAAATAAGGCTATGTCATCTCAAA

Function

GO: NA

KEGG:

id description
K11795 DCAF6, IQWD1, NRIP, ARCAP; DDB1- and CUL4-associated factor 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169178 lncRNA downstream 65549 20757707 ~ 20759225 (-) True G125784
TU169175 lncRNA downstream 86486 20734609 ~ 20738288 (-) False LOC120570047
TU169091 lncRNA downstream 111625 20710865 ~ 20713149 (-) True G125720
TU169078 lncRNA downstream 127534 20691897 ~ 20697240 (-) True G125708
TU169072 lncRNA downstream 137861 20686696 ~ 20686913 (-) True G125703
TU169197 lncRNA upstream 8608 20859599 ~ 20859933 (-) False G125800
TU169199 lncRNA upstream 8608 20859599 ~ 20859991 (-) True G125800
TU169245 lncRNA upstream 59579 20910570 ~ 20910806 (-) True G125839
TU169259 lncRNA upstream 101941 20952932 ~ 20953578 (-) True G125845
TU169254 lncRNA upstream 102670 20953661 ~ 20960064 (-) True G125842
XM_039818302.1 mRNA downstream 15541 20795717 ~ 20809233 (-) True rpgra
XM_039818778.1 mRNA downstream 32527 20775078 ~ 20792247 (-) False srpx
XM_039818777.1 mRNA downstream 32528 20775078 ~ 20792246 (-) True srpx
XM_039818276.1 mRNA downstream 86454 20734550 ~ 20738320 (-) True LOC120570047
XM_039817119.1 mRNA downstream 105011 20715586 ~ 20719763 (-) True LOC120569295
XM_039819032.1 mRNA upstream 10223 20861214 ~ 20865558 (-) True rpl24
XM_039818902.1 mRNA upstream 34658 20885649 ~ 20899445 (-) True me3
XM_039818903.1 mRNA upstream 34658 20885649 ~ 20894517 (-) False me3
XM_039818907.1 mRNA upstream 49983 20900974 ~ 20908154 (-) False ildr1b
XM_039818906.1 mRNA upstream 49983 20900974 ~ 20908154 (-) True ildr1b
TU168946 other downstream 357589 20464109 ~ 20467185 (-) True G125620
TU168944 other downstream 363145 20459162 ~ 20461629 (-) True G125619
TU168785 other downstream 901080 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168717 other downstream 1028736 19790531 ~ 19796038 (-) False LOC120570223
XR_005640980.1 other downstream 1056188 19753043 ~ 19768586 (-) False si:ch211-214p13.3
XR_005641101.1 other upstream 12794 20863785 ~ 20863953 (-) True LOC120570677
TU169256 other upstream 107332 20958323 ~ 20960064 (-) False G125842
TU169333 other upstream 341917 21192908 ~ 21198041 (-) True ecrg4a
XR_005640943.1 other upstream 604575 21455566 ~ 21461127 (-) False cracdla
TU169712 other upstream 1381094 22232085 ~ 22234857 (-) False LOC120569718

Expression Profile