RNA id: XM_039817084.1


Basic Information

Item Value
RNA id XM_039817084.1
length 1988
RNA type mRNA
GC content 0.49
exon number 9
gene id nr1i2
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19900242 ~ 19907077 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTTGTATCTTATAAATAATTGTATGTAAGGCTATTTCCAAAATATTTGGACACGGCAGCCAGCAAGTGCATCTCGCTGCAGCCCTGGGGACTTTAAGGGGGGAGCGGGGGGGCACGCAATGCACCATAAGCGAACATTGCACCACGATGCCCCAGCCTTGGCAACGGGCCCGACCCGCGGGCTGCAGCCAGGAAGACGCTGTACTTGGAACAACAAACAACCGGGCCAACAGGAGTAGCTTACTGTAATGCGATACTCGTTCTCACCTGTTGAGAGTACAGTAAATCCGCCGGGAATTCCGCTCTGCTAGGCGAAACCCCGTGGACTACAGACAGCTGTTTGGACATCTGGAATCACCAAGTCAGTGAGAATGAATAAAGCCGCTGGAGTGCAGAGCATCCGAGAAGCGCTCACAGGGCACAATGAAGAGGATGAGGACGAGGATGGAAGGGTGACAGACGATGAGGAGCCCAGAGCCTGTGGTGTGTGCGGAGATCTGGCCAAGGGTTACCACTTCAATGCTTTGACATGCGAAGGCTGCAAGGGCTTCTTCAGACGTGCCATAAAGAGGTCAACGCAGCTCCGCTGTATGTTCCTGAATAAATgcaaaataactaaaaacaaCCGACGGACCTGTCAAGCCTGCCGCTTCCGTAAATGCCAGGCCATAGGCATGCGCCAAGAAATGGTTATGTCTGAGAAGGAGGTATTGGAGAGGAGGATCCGAATCCAGGCGAGGAAAAGGCTTGACGCACCAATACAGCTTTCATCCCAACAAGAGGAAACCATTCAGGAGCTACTCTGTGGCCACCGCAACTCATTTGACTCAGCATTTTACCGCTTCAGTGACTTTAGGCCTATAGACAGAAACGTCCTTCCTGCAAGTGAGTACAACCAGTCTGAAAGGgacctctcctccctctcctccctctcgcCCTCCTCCAGTCGCTCTGGCTCCTTTAAACAACAGGAGAACCAACAGAATGGAGAGGTCCGAAAAGGCATTGTTTTCACTGCTCTTCCACATGTGGCTGACCTCACCACTTACATGATTCAGGACATTATTAGTTTCTCCAAAAGTCTTCGTGACTTCCGATCTCTAAGCATGGAGGACCAAGTTGCTCTGTTGAAGGGAGCCACATTTGAAATGATGCAGACCCGCTTTAACATGGTGTTTAATGCAAAAACAGGCATCTGGGAATGCGGCCATATTACATACTGCATAGATGACGCCGTACGAGCGGGTTTCCAGCCGCTCCTGCTGGAACCTCTGCTCAAATTTCACCACACACTGCGCAAGCTGGGCCTGCAGGAGGAAGAGTATGTTCTCATGCAAGCCATGTCCCTGTTTTCTCCAGACCGTCCAGGTGTGCAGCAACATAGTGTGATTGACGAGCTTCATGAAAACTTGGCACTGACCCTAAAAACCTGGATTGACTGTAAGAGGACAGGACCAGAAAAACGTTTGTTGTACCCCAAAGTGATGGCCTGTCTCACCGAGATGAGAACGATGGCTGAGGAGTACAGCAAACAGGTTCTGCAGATCCAGGACATCCAGCCAGATGTTATCTCGCCTCTCATAATGGAGATGATCAGTAAAAGCCCCTGTAATGAGGACTTCTAAAACTAACATCTACTGTACATGGACGGGACCCGCTGAATGAGCTGTTTGATTTAAAGCAAAGTATTCAGTTTTTGCTGTTGTAGAAATGTGtcgaaatacaaaaaaatgcatttccgTCATGTGATAGTCTAAAGCAGAGTCcgctagggggtcctcagagttgctgcaggggagccaccaaattattgtttgatagtaaaaaaatatatatactcaccttaaagattattaggaacactcTACTAATAGCGTGTTTGACCCCCtctcgccttcagaactgccttaattcttcgtggcattgattcaacaaggtgctggaagcattctctagaaatgttggcccatattgagaggatagcatc

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168753 lncRNA downstream 1068 19898684 ~ 19899174 (-) True G125460
TU168752 lncRNA downstream 1860 19898002 ~ 19898382 (-) True G125459
TU168751 lncRNA downstream 2312 19897667 ~ 19897930 (-) True G125458
TU168723 lncRNA downstream 40005 19817239 ~ 19860237 (-) True G125434
TU168724 lncRNA downstream 40005 19820568 ~ 19860237 (-) False G125434
TU168838 lncRNA upstream 84331 19991408 ~ 19993321 (-) True G125524
TU168856 lncRNA upstream 236506 20143583 ~ 20144749 (-) True G125539
TU168860 lncRNA upstream 240339 20147416 ~ 20149179 (-) True G125543
TU168871 lncRNA upstream 323008 20230085 ~ 20232060 (-) True G125551
TU168926 lncRNA upstream 423431 20330508 ~ 20330715 (-) True G125605
XM_039818461.1 mRNA downstream 104022 19790052 ~ 19796220 (-) True LOC120570223
XM_039818460.1 mRNA downstream 104023 19790052 ~ 19796219 (-) False LOC120570223
XM_039817058.1 mRNA downstream 126211 19771293 ~ 19774031 (-) True LOC120569249
XM_039817911.1 mRNA downstream 131656 19751701 ~ 19768586 (-) True si:ch211-214p13.3
XM_039817912.1 mRNA downstream 131657 19751701 ~ 19768585 (-) False si:ch211-214p13.3
XM_039819024.1 mRNA upstream 1417 19908494 ~ 19913720 (-) True cfap91
XM_039819008.1 mRNA upstream 14191 19921268 ~ 19923735 (-) True si:ch211-214p13.7
XM_039817226.1 mRNA upstream 27073 19934150 ~ 19943910 (-) False zgc:113337
XM_039817225.1 mRNA upstream 27073 19934150 ~ 19943910 (-) False zgc:113337
XM_039817224.1 mRNA upstream 27073 19934150 ~ 19943910 (-) True zgc:113337
TU168717 other downstream 104204 19790531 ~ 19796038 (-) False LOC120570223
XR_005640980.1 other downstream 131656 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168581 other downstream 302721 19595929 ~ 19597521 (-) True G125326
TU168242 other downstream 1195565 18703095 ~ 18704677 (-) False G125090
TU168244 other downstream 1195565 18703129 ~ 18704677 (-) False G125090
TU168785 other upstream 14277 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168944 other upstream 552085 20459162 ~ 20461629 (-) True G125619
TU168946 other upstream 557032 20464109 ~ 20467185 (-) True G125620
XR_005641101.1 other upstream 956708 20863785 ~ 20863953 (-) True LOC120570677
TU169256 other upstream 1051246 20958323 ~ 20960064 (-) False G125842

Expression Profile