RNA id: XM_039817099.1


Basic Information

Item Value
RNA id XM_039817099.1
length 2829
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC120569280
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 25963002 ~ 25989635 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acactgtctgACTCACTGCTCAACGCATTACACAACCAACCACCAACACCTTTAGGCTTCCAGTAGCGAAGGAAAGCACATGCCAAACGTTTATCTTCTGCATGTGACTCAGTCAGTTCCGTTCACCTCAGCCTGCCCTCCCATGTGTTACTCCCATGTCTCTGTTACCACGGCCCGCTGAACCGGCTGAGCTCTTCCCACGTTCCCCTTCGCCTAGGCTTGTCCCAGAGTAAAACTATGTGCTCTTAGACTCTGTATGCCCTAACCACATCCATACGCAAGTGCTATTTGGTAATGTGCTTTGACAAGAAACACGCAACTTTTTGAATACATATTTTAACCTAACTATTTTAACTTAAGAACGCTGTCTTGGATTATCCACTTTGGTATTCCTGGGCCTATACACCAAGCAAGctaTGGGCCAGCGTTCAACAGTGGGGAGCCTTCTGTTTTTCCTCTGGCTAAATGGGATCTGTACAGGATTTAAACTGGagaATTGTACCTACTACAACAGAACGTTTGAGAGTGTTTACTCTGTTCCCGGGGATATGGCTATGCTGAATAGCACTCTGGTGTCTTCAGACACCTTCAACTTCACAACTGTCCCTTACAACATCACCTGGTACAACTTAAAGACCGGTCGAGAAATGAGCAACCAGACCGGTCGAATCCTGGTGCACAGGGAGACTCTGTGGTTTCTTAACGTAACGGTGGACGATATTGCAGAATATGTTTCTATACTAAGAACTCCCTCTCAGTGCTACAGGCAGGGGATCAAGCTGGTAGTTGATCTGCCCATTGCTGGACAGTGTAGAAGACCAAAGAAAGCCTTTCAAACGCTTACATTGGGAGTCACTGACAAAGTGAGCTGTCCTCTGAAGGACTACATCTCTAAACTGGACAGCTACAACATCACTTCCTCCATCAAGTGGTACAGAGGTTGTGACCTCATCGTGGATGGGGCAGACAAGTTCACCTACATGGATAAGGCCATTCTGAAAATTGAAAGGGTGGAAGCTGAAAAAGACTCGTATACCTGTTCTCTGAGCTTTACTCTCGGTGGCATTACGGGATCAGTGTCAGAGACCATTGAAACAACGGTCTCAGATAGTTACTCTATGCCTCCACAAGTGCGCGAACCGGCCAATGAAATAATCAAGGCACAGATGGGGTCCAATTTCAGCAAGCGGTGCCGGGTATTTGTGCCAGGTGTCGGGAGGCCCTCAGTTGCGATCGCTTGGTCGGTCAGAGACTATTACATTATCGATACCAAACCCTCTGACCGTGTCTCCACGTCAAATCTAAGACTGGAGGATGATCCTAAAGGTGCATGGTTGGAGGTTCTGCTGATAATTTCTGAGCTAAGGGAGGAGGATTTCCACATCAACTACACTTGTCAAGCAGCCAGTGACAGGGGCCCTTCCAAGGGATATTTTACTCTGCTACCCGCAGATCCCAACATCACAATACCCATTGGATCTGTGCTCGGTGGTATGACGGTTCTCTTTATCGTCAGTGTCACCATCTATTACCTTTTTAAGGTTGACATTGTGCTGTGGTTCAGGAAAGCGTTTCCTGTCCTCTACACAAATACAGATTTGGATGGGAAGCTGTATGATGCCTATGTGGCGTACGCACAGCCCTGTGCTATTGGATTTAGCAAGGAAGTGGAAGAGTTTGCTCTTTGCACACTACCCCAAGTGTTGGAAAATGCCTGCGGCTACAAACTCTTCATAGGAGGCCGTGACTGCATGCCTGGGAAGGCCATAGTGGACTCAGTGGAAGAGAACATACAAGCCAGTCGCCGCCTTCTTCTGCTCTACACCGCCTCTACTTTCATCAGCAAAAGACACACAAGCAGCACTAGTAGCAATAATAACAACATCTCTAAGAGCAGTGATAACATTGAAAGGAAGACAGGGGACCGCAGTGGCAGCATGAGTTCTGATGGTAGTGAAGAAGTCTATCCCGACTCAAGACAGCAGTTGGAGTGTATGGCAGCAATGCACAGAGCACTTCTGGAGGGATCTCTCAAGGTAATTCTTGTTGAGTTGGAAGAGATCAGCCCGGCTCAGCTGGCTCTCTTCCCAGAGTCAGTACGTCACCTGAGGAAGAAGCAGGGCGCCGTGTGTTGGTGGAAGAACCTGAGAACGAGGCAAAGGTGGAGGACATgtgtgaggaggagagaggacgaGGAGAAAGGTGGACAGGACACGCAGCTGTCCCCTTCCCTCTCCCCTTCCTCTAGATTTTGGAAGGAGATGAGGTATAGTATGCCGGTGAGGGGCAAGAGGGCAGTGTACCCCGAGAAAACTGCCCTGCTGAACTTATGATGGGAATATGAACCAGAGAGCAGCTGGTTTCCAGTGCACACGTGTGTTTGGCAGAGAAACccttcacacacagacaattcAGAAACACTGACCAGCAGCTGTGAAGTACACGCTCCGATAATACACGACTGGGATAATAATTCAGGCCGGGAATCTAACAGCGGTCCAGGCCAATACATTCACAACAGCCCAAGTAAACTGCAACTTGTTTCCTGTGTACTCTTATATTGGACATTATCATGCTCAATTATGTCCATTAAGTTGTTGAAGCAATGTTTTGGTCAAAATATAACAGGTTTAACTTTTACTTTTTGACCACTTGAGAATTAACTAAAtctagtacagtgcccgttgGAACGGGCGATTTGCTTGGCCTGTAGAACTCTCCagaaccaaattgtaccccaaaatgacttaaagGAGGACCCCAaaacacttaatatgcaactccactgtatagcctactactgacttacagtgtacttctacatcagag

Function

GO: NA

KEGG:

id description
K04386 IL1R1, CD121a; interleukin 1 receptor type I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170998 lncRNA upstream 145908 25825272 ~ 25826290 (+) True G127054
TU170754 lncRNA upstream 752522 25216958 ~ 25219676 (+) True G126904
XR_005640984.1 lncRNA upstream 755688 25213266 ~ 25216510 (+) True LOC120569827
TU170636 lncRNA upstream 1088890 24882094 ~ 24883308 (+) True G126807
XR_005641069.1 lncRNA upstream 1119238 24849398 ~ 24852960 (+) True LOC120570481
XR_005641034.1 lncRNA downstream 92254 26081889 ~ 26084505 (+) True LOC120570231
TU171040 lncRNA downstream 108638 26098273 ~ 26098541 (+) True G127095
TU171174 lncRNA downstream 278250 26267885 ~ 26268101 (+) True G127203
TU171175 lncRNA downstream 302808 26292443 ~ 26292789 (+) True G127204
TU171182 lncRNA downstream 363252 26352887 ~ 26356909 (+) True G127209
XM_039817095.1 mRNA upstream 11016 25952306 ~ 25961182 (+) True LOC120569279
XM_039817096.1 mRNA upstream 11016 25952309 ~ 25961182 (+) False LOC120569279
XM_039817055.1 mRNA upstream 23726 25834659 ~ 25948472 (+) False LOC120569244
XM_039817103.1 mRNA downstream 5949 25995584 ~ 26015815 (+) True LOC120569283
XM_039817102.1 mRNA downstream 38193 26027828 ~ 26074339 (+) True il1rl1
XM_039817101.1 mRNA downstream 38194 26027829 ~ 26074339 (+) False il1rl1
XM_039819168.1 mRNA downstream 97094 26086729 ~ 26095997 (+) True LOC120570670
XM_039817791.1 mRNA downstream 109805 26099440 ~ 26127111 (+) False LOC120569747
TU170822 other upstream 313472 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other upstream 313472 25639806 ~ 25658726 (+) False cacnb4a
XR_005641105.1 other upstream 1104759 24867321 ~ 24867439 (+) True LOC120570682
TU169945 other upstream 3157096 22807193 ~ 22815102 (+) True G126363
XR_005641000.1 other upstream 4283396 21655131 ~ 21688802 (+) False LOC120569986
TU171128 other downstream 127353 26116988 ~ 26129879 (+) True G127165
TU171231 other downstream 421876 26411511 ~ 26417667 (+) False mphosph8
XR_005641067.1 other downstream 2399015 28388650 ~ 28409839 (+) True prkag3b
TU171918 other downstream 3039267 29028902 ~ 29041224 (+) True G127814
TU172007 other downstream 3306849 29296484 ~ 29299361 (+) True LOC120569952

Expression Profile