RNA id: XM_039817224.1


Basic Information

Item Value
RNA id XM_039817224.1
length 1780
RNA type mRNA
GC content 0.51
exon number 7
gene id zgc:113337
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19934150 ~ 19943910 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGAACTCTTCAGCATCCATCCAGTCAACTGAAGTTTGGAGCTGACGCCGGCTGGTGTTCATTGTGCTGCTGGTGCGCAGAAAAGAAAACACGGAGGAGGAAAAATAGTTTCTCGGTCTGGACGACTGCTGGGTTATAAGGACGGGCAAGATGTTGCAGAGGTAGAACATATTCAACAGTTGGCGTTTACCTTTTGCATCAGGACAAGTAGAGTAccactcttcctcctccctgtTAAATGAGCGATGAAGAAGATGGTGATCCAGGCCTCCTGTAGGAAaggtctgcatgtgtgtttactCCTGATGATGGTGGGAAGACTACAGGATGTTTCAGGCAGGGTAACAGCACCCGAGCGTCTGGAAGCTCCAGTGGAGAAGCCCTTCACTCTGATGTGCAGTGTTTCTAGGGAACGAGGGGAGTCTCTAAGGCAGGTGCGTTGGTTGGATGCCCAGAACAAGACCCTGCTGAGCTACCAACCTGGCAACAGAGACAGTGTGAGTGGACAGCAGTATGTGGAGCTCGCCCCTTCCCCGAAAGACACCTCGGCTATCACCATCCGCAGGGTGGGCTTCCGTGATGAAGGCTGCTACACCTGCATCTTTGACATGCATCCTTCCGGTTCAAAGCAGGGACAGACTTGCCTCACTGTTACCTCACAAGTCACCGTTGAAAGCAACAAGACAGCAGTGAGTGGCAAGAAGGCCTCCTTCATGTGCTCCTACGGTTTGCCTGAAAAGGTGCAGCAGATTATATGGAGACACAATTCTGCACAAGGAGAATCCACAGAGGTGGCCTCCTTTGCAAAGCGGAGCGACCCCATGATAGAGCCTACGTTCCAGGGGAGAGTCTGGCTGAGTGCCTCCCTGTCCCACAGTGAGCTCACCATCCAGCCTGTCACCATCCAGGATGAGGGCTGCTACACGTGTCTGTACAACACACATCCCGACGGACCGAAGACCTCCACGGTTTGCCTCGCCATCTATGTCCTGCCAAAACCTCAGGTGAGCTACAAGACCACCTCGCCAGGTGTAATCGAAGCCAATTGCACCTCAGTGTCACGCCCCCCGACAGAGATAGTTTGGAACGTGGAGAGGGATAACAGAACCATGGGCCCCCCTGTGACGACACAGCTTCCACAGAGCGATGGGACCACTCTGGTCATCAGTACGCTGACTGTCCAATCTGGGCTGCTGAAAGACGTGTCCATCAAATGCTTGGTCCACCACAAAGGGCTTGAGTCACCAATTGCTGTATCCATGAACACTAAAATTGGGACGGCTCTCACCATCCTGATCTCAGTCACTACAGTGGCTGCCCTGTTGGTCATGTCCCTCTGCTTCTGCCTTTGGAAGTGTTTCTTGCGCAAAGAAGCTGATTAATCTCTCAGATGAGACCAGAGGCTAAAAAGAAGAGGCAGTGCTTCTCAGAGCCGACCTTGCAGAATTGTTTCActgtgtcatcatcatcatcctcatcatcatcttgGTAAGAAGGGAAGATGTTCTGACACACCTCTATACAGTAGGATGTCGAATACAATCCTATTGAGGGACGCCAACAATACCACGACATTCATCTCTGCTCTTCTTCCTCAGCATCTGACTTTTATATAATCTCCAGGCTGTCTTCACATGGAATCAGTGAGGAAATGTTGAGCGGtccatgtttttctttctggctctgtaattgATTGAGGCGATGGACACACGTTTTTGCAACACACAGCAGAGTCACTGTATGACAAATTAAAGTACAGTGGTTTTGCTGTTACAACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168753 lncRNA downstream 34976 19898684 ~ 19899174 (-) True G125460
TU168752 lncRNA downstream 35768 19898002 ~ 19898382 (-) True G125459
TU168751 lncRNA downstream 36220 19897667 ~ 19897930 (-) True G125458
TU168725 lncRNA downstream 73913 19822770 ~ 19860237 (-) False G125434
TU168838 lncRNA upstream 47498 19991408 ~ 19993321 (-) True G125524
TU168856 lncRNA upstream 199673 20143583 ~ 20144749 (-) True G125539
TU168860 lncRNA upstream 203506 20147416 ~ 20149179 (-) True G125543
TU168871 lncRNA upstream 286175 20230085 ~ 20232060 (-) True G125551
TU168926 lncRNA upstream 386598 20330508 ~ 20330715 (-) True G125605
XM_039819008.1 mRNA downstream 10415 19921268 ~ 19923735 (-) True si:ch211-214p13.7
XM_039819024.1 mRNA downstream 20430 19908494 ~ 19913720 (-) True cfap91
XM_039817084.1 mRNA downstream 27073 19900242 ~ 19907077 (-) False nr1i2
XM_039817227.1 mRNA upstream 9320 19953230 ~ 19958864 (-) True pdzk1
XM_039817230.1 mRNA upstream 82169 20026079 ~ 20118310 (-) True LOC120569358
XM_039817760.1 mRNA upstream 355171 20299081 ~ 20316292 (-) True irs2b
XM_039817761.1 mRNA upstream 357429 20301339 ~ 20316291 (-) False irs2b
XM_039817124.1 mRNA upstream 397376 20341286 ~ 20389402 (-) True col4a1
TU168785 other downstream 10456 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168717 other downstream 138112 19790531 ~ 19796038 (-) False LOC120570223
XR_005640980.1 other downstream 165564 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168581 other downstream 336629 19595929 ~ 19597521 (-) True G125326
TU168244 other downstream 1229473 18703129 ~ 18704677 (-) False G125090
TU168944 other upstream 515252 20459162 ~ 20461629 (-) True G125619
TU168946 other upstream 520199 20464109 ~ 20467185 (-) True G125620
XR_005641101.1 other upstream 919875 20863785 ~ 20863953 (-) True LOC120570677
TU169256 other upstream 1014413 20958323 ~ 20960064 (-) False G125842
TU169333 other upstream 1248998 21192908 ~ 21198041 (-) True ecrg4a

Expression Profile