RNA id: XM_039817230.1


Basic Information

Item Value
RNA id XM_039817230.1
length 5319
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC120569358
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20026079 ~ 20118310 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtttgtgtgtgtgtgtgtgtgtgtgtatataggtaATAAGCTGCTCCGCCACTGCGCAACGATGGAGCTATCGCAACGATGGAGATGACGCAAACCGACCCAGCTCTCCGAAAAAGTGTTTCAAGACGAACATGGCGGCAACTTAACCGCGGTCCAAGATGACAATGGCCAACGGGAGAAAGGATTCTAGGCTTTCCGCCCAGGTACCGGACAGTGTGCGTGCATCAAAAGGGCTCGTTGCTCTTCTTTAAGTGAATCTGCAAAACGAAAGGCGGCAGACGCGCAGCATCAGTACCGAGAGGCTCGCAACTGCTGGTCTCCCTGCGCCCCAGACGAGAGAACAAATCCGGGGAGGAACGGTAGGGAGAGGGGGGCATGCGGTCAAAGAGGACGCCGTTTCCCCCCGGAGAGCCATGGAGAACCGGGATGCGGCAGCGCGAAGCTTAATCTGTGCGGGCGCGCTAATTGGATCGGAGTAGCACCGATTGCTGCGGGCGCGATAGAGGAGCGCCCTGGACCGGCGGAGGCACGGCACCGTTACAGAGGAAAACCAACCGGAGTCCGTTTCCCCAAGTCAATGAGTATTGTGGCAGAGCAGCCCCCGCGGTGGAGTCGGCCAGGGCAGCACTTTCCTAAAATATGACCAGGGGTGCTTGGATGCGTCGGCAGCATGATGAGGGCTTAAAATACTGGTTTGCATCCCGAGAGAACGAGAAGCCATTTACCGAGTCGGAACGGGCCCAGAGATGGCGACTGTCGCTGGCCTCTCTGCTATTCATCACCGTCCTGCTCTCTGATCACTTGTGGTTCTGCGCCGAGGCAAAACTGACGCGAACCCGAGACAAGCGGTCGGACGAGGGGCTTGCAATTACGGACATGGGCGAGTACCCAAACTCCCTCCACCAACATCCAACATCACCTGACCCCAACCATCTCGCCAGAGAGCAAGATGTTATTTTTCTAGGGAATTCTACCAAACCTCTGTGGCGAATGGACACCTGTCATCCAGACAGCCTGTCCAAAGACTGCTTTACTTTCACGGACGCGAAGACCGTGTGCCTGGGCCTCTCCGGTAGAGGGGAAAAGGGGACACAGTTGGCGTACGTGAATCTGAGCGATTTGTACCTTTCTTTTTGTAATTCATACTCACTTTTGGATTTGTTTTACGGGTTTACGAGTCCGGACGATTTGAAATGCACCCTGGATATGGCCATGGGGGTAGACCTGCTGGGATGCAGCAAGTGTGTCCGGGCTTATCAGCTTCTTGACAAGCGGGCGGAGGACAACTACCGGGAGTTTGAACTGCTGGTTCAGAAATACGAGACGGATGCATACTCGGTCAGGACGTGCATGGAGGAATGCAAGATGGTTTATAAGCCCTGGCTGTGTTCTCAGTACTTCCAGACCACCCAGATGCACTGCAGTAAGCGAATCCCCTGTGGTCAGTACTGTCTGGAGGTGCAGCAGCGGTGCCCCTTTGTCCTGCCCGACAATGATGATCTCATTCATGGAGGAAGCCCCAGTTTTATATGCACAGGGCTGCTGGAGGACTATCCATCAGGTGTTGACCCAGATGCAGAGTGCTGTGACGTGCGGTGGGACTTGAAAGTGGACAACCGTTCCCGGGGGACCCTGAAAAGAACTCACCCACCATGCCAGCACCGTACCTCCCTCAGCTCCTCTGCAGCCTGCAGACTGTGTAACAGCCGGCTCAAACTCTGCCTCCTGGTCCTTGTCCTCCTACACACTGTTGCCAGCCTCACTgcatcccacaatgcaacaggACTGGGCCTCCCTGCCATTACGCCTCTGGAGGAAAGCCCTGCCAATGAGGAGTGATAGAGCTGCCAGGAGGATGTGAGGTGGTTGGGGTGGGGGACTCCCTCACCATGGCAACCAATGTGGAAAAATACAGCCGCAGTTGTGCGAACGGCTGGAGCTGTGTGCCTGTGGACATTCTGCAACGCTTTCTGGCAAATGGAAATTGTGGGACGCTGTAAGACGAAAGACACACAActcaatcaaaacaaataaataaggaaACAAACAGACATACTAAGGGACTCAACCAGTCCCTTAGATAGGAAGGGGACAATGCCTCAGCCTTTGTTGAGTGGGAAGGTCGGCTTCCCATGGCTGAGTTTCTCTCACTACGCTTTTTTACACTGTGTTCCAATTATTGGTTTCTGTTGCACTGGCTGACTATGGAATAACACAATCATATTCTCTTTCTAATGTTCatcctttgtgtttgtttctggtTCTCTCATACAGGAAGAAATGCGTTCTCTAAATAAGACAgacaatgtgtaaaaaaaattattaactgcaagtttgtgtgtgtgcaatggtTTGTGTTTCTagatttactgtgtgtgtgggtttgcgtgggcgtgtgtgtgcatgcatgtctttacacatgtgtgtatgtgagtgtatgagagggtgagtgtgtgttgctGACATGTACCCTAAAAGTCTAGCTAACAGGCTGTTGCAGCGATGATGTTTTatggaacccccccccccaaagatgTCACTTATTATAGCTCTGTCATGCTGGTTTGTTGGCCGCAATCCCAGTCAAACTTGACTGGGTTTTGAATGTGGTTTTGATGTCCATAATGAGGACTGTGTTTAATGGAGGTTTAAGGTTTTCCTACGCTTTGTTTTGTGAGATAATATTCACCTATTAACACAGATctaaacatttctgtaaatcagTAAACAGCTTACACCTGCTAAACTTTGAAACACATCAGGAACAAACAGCATGTATGCTTTCAATATCGCCAACATTGATATCTCAATTTTATTACAACTTGGGACCTCTTTTAATAGTTTTGACTATGATTCATATCACTGAAGTCTGACAGGGGAAAATACTTATATGGCAGAAAGAATGAAGGCTGAGTGTGTGCACACAGTTTTCCTGCGTAATGAAGGATTATTATAATCATTTTGGGTGCACTAACTTTTAGTTTTACGCCAAATACAAAGAACTGATAGCTTGTCTCTAATTTATGTTTAATATATGTCATCTGACTGCTTGAGTTTCTTGCCCCATTGGACTTCATTATAGTGATGTTGGTGTGTTGCCTGATCTCAGCAGTTACTTGGTTAAGTAAAATGTTATCATAATCAATAAAACTGATGACAAAAACTATACAAGTAAGACCCAAGCTGTATCAAACCATAATGATATTCAAGCTTCAGGTTAACACTACCATAGGGCTGAGCCACTTGGAAAATAATTTTACATAATAACAAATTTACAGAAATGTAGATAGCTTTTAATTAACATACTGACACAATTAAGAGGGAATCGTATCATTGGTGTTGGTAATTTTTGGTTCATTACCATTTAATAATTATAGTTGAAATTTTTATACCTTAAATAACTGTTAGCTATTAAATTTCCAGAATATAACATGAATATTTTGCTATAGATCTTTTATTGTTGACTTTTTAAAGAGTTTAAAGAGTTGTTCAACTAATACAcagcaaacaaaaacaacacagatagGATTTTATctcataaaacaaaacataaaactgtCAAGCTTGTCTTAACCGAAGATGTTATTTCAGGCATTTTACAAAAACCTCATTCAGATTGTGGCCACTTATCAGCAACATTGCTCAGCAAAGTTAACCAACATCAAGATTATAGCACCGGATCAATATTTAATATTCGTTGTTGTTCCAGACGAAGAAGcttttgttattttagttttaaaattttaaaggTACTATCCAGTCAAAATAATGTCCACAACAACTAAAAACAATGGGGACTGAAGGCTCCTTGTTCTCTTCTGCCTCAAGACCCTTGGTTCTTTTCCTTCTCCCTGCTGGTGACCAGCAGTTCAAGTACTAATAATTTTATTATATCATCACTCAAACAAAAACTCAATTTACGAAACAAAACTGACATCTACGTATATCAGTGGTGTCATTTTAACCTCAGGCCTTTTTATTTATAAGAAACATGATGACTGGATATTACCtttaagaacttttttttttataatgagtCAACTGTAAGTCTCATGCAGTTATTATGaagataaaatgtcaaagtctcACTAGAAATGTAACATGCTACTTGCAGTAGCATAAAGGAAAATCCCCAGTCTACTAATACAGTAGATATATTATACTACCCCATTCCCTGGCCATACAGTACGTATAGAATGATACTCTACatatcatcaacagtttgttTCTGTTGAATCCAAACGTGTAATCGATTTTCATGAACTGCATGTGGAGGCTCTTTGCAATGTTATGTCTCTTATGTTGATTGTCCTCAGCCCCACTCCGCACTCCACATCTGATCCCAAATCAGCTCCTGTAGCATGCCCACTGTCCTCTACTTTTCTCCTCAAAACATCAAACTAATGTTTCATTAAGTAAAGGGCTTATtaagatatacagtacaaacatcATAATCACATGCACATGCAAAATTGTTAGAAGACAAAGGGTAAAACTTGGCTCACTTCCTGTTTCTTTTTAAACTGGTATACCTGTAGTGCAGAGGCATTCCACTGGCTGTTGCCGGAGAGCAGGTACAGAAACAAATCCAGAGAGAGGAGCATGTCACTGTTTGAGTTAGCACTAATGGCATAACCTGATAATCGTCCAAGTCAGCTGACACTTGGAATGTCAGAGGAATGGTATGACCTCAAGGGCTGACTTCTTCTTTAGTTTCTCAATTTTGTTTTGTCTCTTCGATGAACAAGGCTGTGAGATCAGGTATTTAAAGATAAAATGTTGTTGAATGCATTCTTTTCCACTCTCTGATTTCTTAAATGAGATGTCCAATTTGATGTCAAGAATTTTATTATACAGCTTATATGagaatttaaaatacatcattATTCATATACAACCAGTATATTGGCTTATTTTGACATATATTCAGTTTAGACCCTGCCCCCGCTAGACCTTACCATTACTGCTTGCATGAAATACATTAAAAGGAACTCATTCAGAACAGCACACCCATGCCCATCTTGGATGGCTGCAGTCAGTAACAGAAAAATGCTGCTATTCTATTGGTTACCAGTAGATGGAgatatttttattcttttatattgctgctgctgctgctgctgctaaagaCTTTTCACACAAGGACTGTCATCACACAAGGACTGTCATCACACAAAGACTGTCATCACATGAGGAGTGTCATACACAGGAATCAGGAAGGCCGAGCGCTGGAGGAAAAAGTgattgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgcatgcatgcgtgcgtgcgtgtgcgtgcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168838 lncRNA downstream 32758 19991408 ~ 19993321 (-) True G125524
TU168753 lncRNA downstream 126905 19898684 ~ 19899174 (-) True G125460
TU168752 lncRNA downstream 127697 19898002 ~ 19898382 (-) True G125459
TU168751 lncRNA downstream 128149 19897667 ~ 19897930 (-) True G125458
TU168725 lncRNA downstream 165842 19822770 ~ 19860237 (-) False G125434
TU168856 lncRNA upstream 25273 20143583 ~ 20144749 (-) True G125539
TU168860 lncRNA upstream 29106 20147416 ~ 20149179 (-) True G125543
TU168871 lncRNA upstream 111775 20230085 ~ 20232060 (-) True G125551
TU168926 lncRNA upstream 212198 20330508 ~ 20330715 (-) True G125605
TU169011 lncRNA upstream 466338 20584648 ~ 20584932 (-) True G125658
XM_039817227.1 mRNA downstream 67215 19953230 ~ 19958864 (-) True pdzk1
XM_039817226.1 mRNA downstream 82169 19934150 ~ 19943910 (-) False zgc:113337
XM_039817225.1 mRNA downstream 82169 19934150 ~ 19943910 (-) False zgc:113337
XM_039817224.1 mRNA downstream 82169 19934150 ~ 19943910 (-) True zgc:113337
XM_039819008.1 mRNA downstream 102344 19921268 ~ 19923735 (-) True si:ch211-214p13.7
XM_039817760.1 mRNA upstream 180771 20299081 ~ 20316292 (-) True irs2b
XM_039817761.1 mRNA upstream 183029 20301339 ~ 20316291 (-) False irs2b
XM_039817124.1 mRNA upstream 222976 20341286 ~ 20389402 (-) True col4a1
XM_039817125.1 mRNA upstream 353297 20471607 ~ 20476349 (-) True rab20
XM_039817242.1 mRNA upstream 373856 20492166 ~ 20498871 (-) True ube2al
TU168785 other downstream 102385 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168717 other downstream 230041 19790531 ~ 19796038 (-) False LOC120570223
XR_005640980.1 other downstream 257493 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168581 other downstream 428558 19595929 ~ 19597521 (-) True G125326
TU168244 other downstream 1321402 18703129 ~ 18704677 (-) False G125090
TU168944 other upstream 340852 20459162 ~ 20461629 (-) True G125619
TU168946 other upstream 345799 20464109 ~ 20467185 (-) True G125620
XR_005641101.1 other upstream 745475 20863785 ~ 20863953 (-) True LOC120570677
TU169256 other upstream 840013 20958323 ~ 20960064 (-) False G125842
TU169333 other upstream 1074598 21192908 ~ 21198041 (-) True ecrg4a

Expression Profile