RNA id: XM_039817373.1


Basic Information

Item Value
RNA id XM_039817373.1
length 3093
RNA type mRNA
GC content 0.40
exon number 7
gene id gpm6bb
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19128224 ~ 19158065 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGCTGTTTCCAAACGGACGCAGCGTTGAGTGTTTGAGCAGCCAGGCGGCCAGTGTGTGCATCCCAGGACGCAACATCAGTGTAGCTGGGGCTCGACTTTCAGCTGATCGCTTCACTTCGGACGCTTTGGGAAACTTACAACAATGGGTTGCTTTGAGTGCTGCATCAAATGTTTAGGCGGGGTGCCGTATGCGTCGCTGGTGGCTACAATCCTCTGCTTCTCTGGCGTTGCCCTGTTCTGTGGATGTGGCCATGTGGCTCTCACTGGCACGGTGACCATCTTGGAAACCCACTTCTCCAAGGTCACCAGTGATCACGCCATGCTGACTGATGTAATACAGCTGATGCAGTATGTCATCTACGGCATTGCTTCATTTTTCTTCCTGTATGGGATCATTCTGCTGGCTGAGGGCTTCTACACAACCAGTGCCGTAAAGGAACTGCACAGTGAGTTCAAGACCACCATCTGTGGACGCTGCATCAGTGGAATGTTTGTGTTCCTCACATACATTCTGGGTGTGGCCTGGCTCGGTGTGTTTGGCTTTTCGGCCGTGCCAGTCTTCCTCTTCTACAACATGTGGTCTACCTGTGCGGCCATGAGGTCTCCCATAGCCAACCTCACCAACATTGACTCCATCTGTGTGGATGTTCGTCAGTACGGAATTATTCCATGGAATGCCACACCAGGCAAGGCCTGTGGATCTACGCTAGGTGACATCTGCAACACCAGTGAGTTCTACCTGTCTTATCACCTGTACATCGTAGCGTGTGCCGGGGCAGGAGCCACTGTGATCGCTCTGATCCACTTCCTCATGATTCTCTCAGCAAACTGGGCCTACCTTAAGGATGCCAGTCAAATGCATGCCTACCAAGACATCAAAATGAAGGAAGAGCGGGAGCTGCAGGACATCACCTCACGCTCAAAGGAATGCCTCAATTCCTACACATAAGGATATTACACACTcacaatccacacacacaaatgtaaagACACATAGACACTGCGGCCAACCACTGTGGCCCCTTTGGACCATGACACTCAGCTAAAATAACCTGCCAACTGCCGTGACACTGTGCAGTACTAACCAGGCTCCTAACAAACTAATGCATAAATGTTGCTTTCTGCACTAACTCACCAAGAAGTGTTTTGAAACTGCTACTTCAaatttcatttctatttttatttttatgaaggaaaaaaaaggcaatTTTGAATTCTGATATTCATGTAGTGTTTGATTTTCTCTAGCCCTTTTTATAGCCAGTTTTTTGCTGGCGATGCTTGAGTCATTGCACTATTCTTATATAACGAATAACGATGCCTTGTTTGTTTTACGGTCTTGCTGTCTTTCTTTTGAGCTGTGGTGGCCAGTTTTCAACAAGAGAATACAatattttgtttgctttcttttcCAATCAAAAATGCAGACTAATTATACATAACATGAAAGGCCTTACATTCAGAGTTAGCGTGACACTTCTAGATAGCATGTCAGAATCCAATTATAATGACACAAGATAATAATACTGACACAAGACCGGCATGTCACAAGATGTTTTTTCTTTGACTTCACAGCAAGGAGAATGGGTCAAATCTATAATGTGGACCCAGTAGTTCTGTTGTATTCGGGGGTATTTCACTGCATCTTAATCCCAGTGTTAATCATTTGGTTCTAGATTTCATTGTACAGCTACGCAAAAAGTCACGCAGAACATTCATGGCCTATAATAACACTACCTCAGGTGTGCACTAGAGCCTATAGAACAATTATCTGGAAGAAACACTTCTCCTTTGCAAAACTATGGTTTGATCCTATTATAATCACACACACCGGGAGCTTCTCTACGTGACATTATCATAGGGTTTAATCTTTATGGATAATGCCATAAGAATAACTAGCTTGCTAAATGTGAACTGTTGCCAATAATTAGACAAAAGGATAGTCAATGTATTCAATATCTTTAAAAGTGTGGTCCACGTGTATTCAGTTAtgcaaatgacaaaaaacagagagagcGCTCTCTGATCCATCATAAATGCTTTTTTAGCTCATTGTCTATTGTAATATCTCATATTgtaaaatatgataaaaaaatacttgattttgaaaaaccttataaacaagtgTATGTCCCATGTGCATTCGTACTATGGAAAAATCTACAGAACTTAAGGTGTGAAAAATGTAAACTTGTTAAGTCAGGATTTTTAGCTTATTTTTCAAGATAAAACCACTTCATTTGTGTTCTTAATTTTCTATTATTGCACCAGTTTTTGATGTGCAATTGTCATAATGCTGACATAATTACTCATGTAATCTTGTATTTCTATTAGTTTAGTTACAGAGATAAGTTTCTTTGTTGCATGAAGACAACTGTTTCTGCAGTGACACGTGATGTACAGTCATGTATACTGACATCAGTAGTAGGCAGTGTTTgcctgtctcctttttttctaattaaatacaaattaatccatttttttgtagctgattacttatgtttttttaggttcttttctttaaagtcaaaagtataaatgttttatattattttgttgCCTGATAGTATACTTGTATTGTCTATGAATGTCAAGGGCTTCCTCGTGAATATCTGATgcttaacatttaaataaactttcaAATAACTAGATGCAACaccagtcatttaaaaaaaaaaaaaattgtatggcTTTCTAAATGCTAAAGTTAGCCAAAGTATGAATGCCATTGTGACTGTCCGCCCAGTGTTTTACACAGAATCTGTGAGATATTGTAATACACAACCTGCATAGTTCTCTGCAGGAGTAATAGCTACAGGTGCACAATCCtagacatatatacatatgtctATGTGTACAATGGCCAAGGAGAAAGATGACAGATGTACATAATGccaatgtactgtacatctcACCTTAATATGCAGAGTTTCCTGTTGAATGAACCAAAAACTAAAGAGTAAAGGCTATCTATCAATCACCAGGACGACAACAATCCAGCATCCTGTCTGACTGGAAATCCCTTTATGACATTACTCAACTGGCCTGTTGActgtttttatgaaaataaaaaaacaacaaaataaaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640882.1 lncRNA downstream 14443 19108684 ~ 19113781 (-) False LOC120569517
TU168387 lncRNA downstream 16440 19108300 ~ 19111784 (-) True LOC120569517
TU168374 lncRNA downstream 37445 19089502 ~ 19090779 (-) True G125178
TU168365 lncRNA downstream 51458 19073235 ~ 19076766 (-) True G125173
TU168281 lncRNA downstream 280855 18845832 ~ 18847369 (-) True G125116
TU168446 lncRNA upstream 43681 19201746 ~ 19205941 (-) True G125227
TU168460 lncRNA upstream 73927 19231992 ~ 19233621 (-) False tbl1x
TU168536 lncRNA upstream 273999 19432064 ~ 19432431 (-) True G125293
TU168537 lncRNA upstream 277577 19435642 ~ 19436047 (-) True G125294
TU168538 lncRNA upstream 281361 19439426 ~ 19439851 (-) True G125295
XM_039817378.1 mRNA downstream 9637 19116575 ~ 19118587 (-) True trappc2
XM_039818893.1 mRNA downstream 95035 19010827 ~ 19033189 (-) True LOC120570505
XM_039818894.1 mRNA downstream 104217 19010827 ~ 19024007 (-) False LOC120570505
XM_039818243.1 mRNA downstream 131240 18977212 ~ 18996984 (-) False mid1
XM_039819101.1 mRNA upstream 31118 19189183 ~ 19195845 (-) True fancb
XM_039819108.1 mRNA upstream 56688 19214753 ~ 19221945 (-) True LOC120570636
XM_039819103.1 mRNA upstream 73922 19231987 ~ 19258846 (-) False tbl1x
XM_039819104.1 mRNA upstream 73922 19231987 ~ 19258846 (-) False tbl1x
XM_039819106.1 mRNA upstream 73922 19231987 ~ 19250234 (-) False tbl1x
TU168242 other downstream 423547 18703095 ~ 18704677 (-) False G125090
TU168244 other downstream 423547 18703129 ~ 18704677 (-) False G125090
TU168243 other downstream 423672 18701648 ~ 18704552 (-) True G125090
TU168240 other downstream 428422 18695480 ~ 18699802 (-) True G125089
TU168581 other upstream 437864 19595929 ~ 19597521 (-) True G125326
XR_005640980.1 other upstream 594978 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168717 other upstream 632466 19790531 ~ 19796038 (-) False LOC120570223
TU168785 other upstream 763289 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168944 other upstream 1301097 20459162 ~ 20461629 (-) True G125619

Expression Profile