RNA id: XM_039817398.1


Basic Information

Item Value
RNA id XM_039817398.1
length 1900
RNA type mRNA
GC content 0.43
exon number 5
gene id stx19
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 12625974 ~ 12632469 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTCTTGGTGGCATGACTGTTACAGAGTATTCAAGGCTGTAACTCACAGCAAATGAGTGTAAGGAGATCTGAAGATGGCATGATGCTATTAAAGAATGTGTGAGTTTGTTTTGGATTACATATCTGGTCAACTGTGAATGGGAATACTAAGCAGACAGCTAGTGATGGAATACTAACATTAAGCGACTCCGTAGGCGGTACATTCCATAATAACATTGTGTCCTGAGGAGTGACCTTTGGTGAGAGATCTTTCACAATGAGAGACCGcttggaggagctgcagcagaggGCTCAAGACTTGTCTGAGGCAACAAGTGAGAGTGGCAACCCTTTCTCAACTGAGGGTGGCAATTATGACTCTGTGGCAGTCATAGTGCCACAGGCAGTGGTGTTTGAGGAAGAACCAATCATTCAGAATTTCCTGTCTGAGGCTCAGCAAATCCGAGATGATATCACACTGCTGGAAGTAGagGTCCTTAAGTTTGGCCAGCAGCAAAAGACCCTGGTGGCAACCATGCGTCGTTTTAGTGTGATGAAGAAAGAGAGCAGCGTAACCCGGGACATCAAGCTCAAGGCCGAGAGCCTCCATCGGCGCTTGGATGCCCTTTCAAAACAGGTCCAAAGGACTGAGGACCAGCAGGGACCTACTGCTGTCACAACAAGAATACAACACTCCCAGCATGCAGCGCTGTACCGAAAATTCCAGCAGGTAATGCTGCAGTATAATGAAGGTTTGCTGACCAAGCAGGATCGCTGTAAGCACTTCATTATCCGGCAGCTGGAGGTATCGGGAAGGGATGTgacggaggaggaggtgaaTGAGATGGTGGCCACAGGAAAATGGGAGGTCTTCAATGAAAACCTGCTGAATGATGCCAAAATCACACGGGCACAACTATCTGAGATTGAACAGCGACACAGGGAGCTGTTGAGTTTAGAGAACAATATGAATGAGCTGCGGGACCTGTTCATGGACATTTTCATGCTGGTGGAGGAACAAGGGGCCTACATTGAACATATCCAGACCAATGTAGAGAGGACGCAGGATTATGTGGCTGCATGTAATGAGAAGTTCAAGATGGCCGCCAGATACAAGAAGAAGAATCCACTTCGAcagctgtgctgctgctgctgccctccCTGGAAATGCTGCTTATAAAACATGCATTGTTACCTCAACAGTCATTCGGAATAACGTTTAATTTCAAAAGCCTCACTTACCTTTTGGGATTTAGCAACGTTGGATTCAAGTACCATTAAAGTGAAGGTTATGGCACTGTAGTTTTGCTTTTGAGCAGAGCAACGGTGAAGACAGAGTCAGCGGAGCATAGAAAACAATTAGGGGGAAAAGCCAGAATTGGTATTTGAGATATTTGTTTCTTTCAAGAAGATGTGAGGTGACTGCTATTGGAAGAGACAGTTCAGTGAGCGCTACTCACCAACACTGCTGCTTATTGGACACCTTCACCGACTTCTGACAGAGGTCACGAACAAAGGGCGACCACTGCCTCTGCCACTGCTTGATCAACAAGactgattttgtttgtttttttcgaaGAAGAGCCTCTCATTTTTATTCTACCACAGGAGCTCTAGTTAATGACCATTTATTTGTTACACAGTATGTGCACTTTATGAATCTTATCTAAAGATATGCTTTTCTTTTCAGAACAAACTGAAATTTAACATAGTTGAGAAATATTCACTTTCTGAGAGATAATAAGCTATTATGTATTCATTTCATTCTTGGTCCACATGCctttgaaaaaagaaacttgTTTTACAATAAGTTACCTGTCTCATTTGCATTTCAAAGTATGACCATTTtcagtaaaataaatattattccTTTATTCTGTTTTACAGAGGCAGGGATTCAAATAAAACTTTGAATAACAA

Function

GO: NA

KEGG:

id description
K08487 STX11; syntaxin 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166093 lncRNA upstream 22367 12603396 ~ 12603607 (+) True G123479
XR_005640888.1 lncRNA upstream 210630 12413552 ~ 12415344 (+) True LOC120569536
TU166058 lncRNA upstream 361643 12261767 ~ 12264331 (+) True G123453
TU166059 lncRNA upstream 361643 12263396 ~ 12264331 (+) False G123453
TU166040 lncRNA upstream 389683 12232683 ~ 12236291 (+) True G123439
TU166109 lncRNA downstream 31532 12664001 ~ 12664471 (+) True G123491
TU166111 lncRNA downstream 43457 12675926 ~ 12676126 (+) True G123493
TU166112 lncRNA downstream 44640 12677109 ~ 12677412 (+) True G123494
TU166126 lncRNA downstream 229085 12861554 ~ 12861823 (+) True G123505
TU166271 lncRNA downstream 739879 13372348 ~ 13377140 (+) True G123634
XM_039818745.1 mRNA upstream 364717 12253104 ~ 12261257 (+) True LOC120570413
XM_039818743.1 mRNA upstream 364717 12253421 ~ 12261257 (+) False LOC120570413
XM_039817935.1 mRNA upstream 440368 12184466 ~ 12185606 (+) True tmem223
XM_039819133.1 mRNA upstream 512711 12060670 ~ 12113263 (+) True LOC120570655
XM_039817233.1 mRNA upstream 613237 12007657 ~ 12012737 (+) False serp2
XM_039818451.1 mRNA downstream 304506 12936975 ~ 12947546 (+) True zgc:152951
XM_039818452.1 mRNA downstream 304506 12936975 ~ 12947546 (+) False zgc:152951
XM_039818492.1 mRNA downstream 405355 13037824 ~ 13048644 (+) True pou1f1
XM_039817132.1 mRNA downstream 444269 13076738 ~ 13079755 (+) True vgll3
XM_039818979.1 mRNA downstream 472760 13105229 ~ 13121650 (+) True LOC120570582
TU165581 other upstream 2007278 10607484 ~ 10618696 (+) False lrp1bb
TU165424 other upstream 2697083 9926817 ~ 9928891 (+) False umps
TU165423 other upstream 2701134 9920711 ~ 9924840 (+) False umps
TU165208 other upstream 3829228 8795453 ~ 8796746 (+) True G122846
TU164880 other upstream 5476935 7146625 ~ 7149039 (+) True G122588
TU166170 other downstream 417289 13049758 ~ 13279866 (+) True G123539
TU166270 other downstream 720837 13353306 ~ 13354085 (+) True G123633
TU166312 other downstream 1003117 13635586 ~ 13677346 (+) False cps1
TU166397 other downstream 1600863 14233332 ~ 14234070 (+) True G123742
XR_005640926.1 other downstream 2506008 15138477 ~ 15155886 (+) False trpm2

Expression Profile