RNA id: XM_039817412.1


Basic Information

Item Value
RNA id XM_039817412.1
length 1767
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC120569548
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17581470 ~ 17629519 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGCTTGCCAGCGTACAGTGTCAACTTTCATTTCCATAGGCTGCATGTTCTATTTTTAACCCAGGGGAGCAAGCCAGTTGAAGTGCGGGCGACTGGTTACAGTTGAGGACTTAGCTTAGCACGTTTTCTGtcaatgaatgtggtgttttctCTGAGTTGGTGAGCTGTTGTGGACGTCAGCAAAAACGTAACAGTGGGAAATGGCTCCAAAGAAGGGAAAGGGAGATGATGCAACAAAGCCACCACCACTGATTGGAAGGTTTGGCACTTCATTGAAAATAGGAGTTGTTGGCCTGCCCAATGTTGGgaAGTCAACCTTTTTCAACGTGTTGACAAAGAGTCAGGCTGCAGCTGAAAATTTCCCCTTCTGCACCATTGACCCAAATGAAAGCAGAGTGCCCATTCCAGATGAACGCTATGATTTCCTCTGCCAATTCCACAAACCTCCCAGCAAAATCCCAGCATTCCTTAATGTTGTTGACATTGCTGGCCTGGTGAAAGGTGCTCATGCTGGACAAGGCCTGGGAAATGCCTTCCTGTCCCATATCAGCGCCTGTGACGGCATCTTCCACATGACACGTGCTTTTGAGGATGAGGATATCATCCATGTTGAGGGGACAGTGGACCCAGTGAGGGATATGGAGATCATCCACGAGGAGCTGAGGCTTAAGGATGAGGAGATGATCGGCCCTATTATTGACAAGCTCGAGAAGACAGCCATTAGAGGCGGTGACAAGAAACTCAAACCAGAATACGACGTTATGTGCAAAATCAAGAGCTGGGTAATGGATAAAAAGAAACACGTCCGCTACTATCACGATTGGAACGACAAGGAGATCGAAGTGTTGAACAAATACTTGTTTTTGACATCCAAACCAATGATATACCTCGTTAACCTCTCTGAGAAAGACTACATCAGGAAAAAGAACAAATGGCTGGTGAAAATCAAGGAGTGGGTGGACAGTCATGACCCCGGAGCCATGGTCATCCCCTTCAGCAGCGCCCTGGAGAGCCAGCTACAGGACAAGAGTGAAGAGGAGAGGCACCAGCACTGCACAGAGCACAAGACGCAGAGTGCCCTGAGCAAGATCATCAAGGCAGGCTATGCAGCCCTGCTGCTGGAGTACTTCTTCACTGCTGGACCAGATGAGGTCCGTGCATGGACCATTCGGAAAGGAACTAAGGCTCCACAGGCTGCGGGGAAGATCCACACCGACTTTGAGAAGGGCTTCATTATGGCGGAAGTAATGAAATTCCAGGATTTTAAAGAGGAAGGCAGTGAGAACGCTGTCAAGGCGGCAGGGAAATACAGACAACAGGGAAGAAACTACGTTGTTGAAGATGGagacatcatttttttcaagtttAACGCACCAAATGCACCaaagaaaaagtgacacaaGAACAATCTGTTTGTTTACATAACTGACTTGTGCTTGTTaccccctttttttctctttggccTGATACCCACTGCCACACTCACTTTCTATAGGATCAAATCCCCCCTCTGATCCAAAGCACAGGTTCTGTAAACTCTGACAGCTTTGCTATTTAAGATCAGGATCGGCCCCCACTTCAAATTGTAGCAGCATTTGAAGGAGCATATTACTCTCCAGATACCTCATTAATCTCCATCACGGGTGCCAGCACTGACACAGCTGACAGCGGGGACAATGCCACCTGCTCTTCTCCCCCTTCTGCAGATAATGCATGTTTTACAGTAGCCCAGATGTCTACACTCAATAAAACATTTGACAAaacca

Function

GO: NA

KEGG:

id description
K19788 OLA1; obg-like ATPase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167694 lncRNA downstream 230724 17347911 ~ 17350746 (-) True G124691
TU167666 lncRNA downstream 243210 17248369 ~ 17338260 (-) True G124673
TU167700 lncRNA downstream 286830 17291927 ~ 17294640 (-) True G124695
TU167696 lncRNA downstream 291032 17287949 ~ 17290438 (-) True G124693
TU167672 lncRNA downstream 351354 17227899 ~ 17230116 (-) True G124679
XR_005640878.1 lncRNA upstream 107765 17737284 ~ 17822487 (-) False LOC120569506
XR_005640876.1 lncRNA upstream 107765 17737284 ~ 17822487 (-) False LOC120569506
XR_005640877.1 lncRNA upstream 107765 17737284 ~ 17822487 (-) True LOC120569506
TU167930 lncRNA upstream 392890 18022409 ~ 18023477 (-) True G124872
TU168090 lncRNA upstream 462808 18092327 ~ 18092530 (-) True G125000
XM_039818790.1 mRNA downstream 5909 17567417 ~ 17575561 (-) True sp3a
XM_039819079.1 mRNA downstream 123102 17433659 ~ 17458368 (-) False ppp1r9ala
XM_039819078.1 mRNA downstream 123144 17433659 ~ 17458326 (-) False ppp1r9ala
XM_039819082.1 mRNA downstream 124000 17432590 ~ 17457470 (-) False ppp1r9ala
XM_039819080.1 mRNA downstream 124000 17432590 ~ 17457470 (-) True ppp1r9ala
XM_039817421.1 mRNA upstream 7280 17636799 ~ 17642646 (-) True cir1
XM_039817414.1 mRNA upstream 18624 17648143 ~ 17658404 (-) True gpr155a
XM_039817422.1 mRNA upstream 30651 17660170 ~ 17668404 (-) True LOC120569555
XM_039818601.1 mRNA upstream 42695 17672214 ~ 17682844 (-) False chn1
XM_039818600.1 mRNA upstream 42695 17672214 ~ 17682843 (-) True chn1
TU167228 other downstream 1200705 16378609 ~ 16380765 (-) False gcgb
TU167157 other downstream 1479877 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 2164198 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 2587681 14984485 ~ 14993789 (-) True G123960
TU166600 other downstream 2791564 14784561 ~ 14789906 (-) False G123886
TU168094 other upstream 483591 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 483991 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 484053 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 527213 18156732 ~ 18163749 (-) False prkra
TU168240 other upstream 1065961 18695480 ~ 18699802 (-) True G125089

Expression Profile