RNA id: XM_039817419.1


Basic Information

Item Value
RNA id XM_039817419.1
length 1714
RNA type mRNA
GC content 0.45
exon number 8
gene id scrn3
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17643338 ~ 17648252 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACGTTACTGGACTGTTTCCGCTTGGCCAGAACTGAGATCATatgaaaacagaaatgaaaataGAAACTTACAGCGGCAGTGCTCGCAAGTTTCAAAATGTACCCCTACTCCTGTGACACCTTTGTGGCTCTGCCCCCCTCCACTGAGAGACAACGCATCATCTTTGGGAAAAACTCCGACAGGCCTTGTGATGAAGTCCAGGAGGTGGTGTATTTTCCTGCCAGGAACTATGGTGCAGGGGAGAGGGTTGAGTGCACATACATAGAGATTGAGCAAGTTGCCCACACTTATGCAGTTGTGTTGAGCAAACCAGCATGGCTATGGGGCGCAGAAATGGGTGCAAATGAGCATCAAGTGTGTATTGGAAATGAAGCAGTGTGGGGCAGAGAGAGTGCAGATGATGACGAAGCTCTTCTCGGCATGGATCTTGTCAGGATTGGACTTGAGAGAGCCGATACAGCAGAGAAAGCTGTGGATGTTATTACTGAGCTGCTGGAGAAATATGGCCAGGGAGGATCTTGCATGGAGGATGAGTGTAGCTTCACCTACCACAACAGCTTCCTCATCTCAGACAGGAAGGAGGCGTGGCTGCTGGAAACGTCAGGGAAGCACTGGGCAGCAGAGAGAGTGGAAGGTGGATATCGCAACATCTCAAACCAGTATGGCATAACGACTAAGATAGACAAGGAACATCCAAAAATGAGGGACTATGCACGAAGCCAGGGCTGGTGGGATGGAGAGACCCAGTTCAACTTTGCCACGGTCTACTCCTTTACAACTACAGCCAGAATCGAAGCCTCTGGCAGCCGATACTGTGAGGGGAAGAAGTTGCTGGAGAAGAGCAACGGTCACATCACTGCTGAGACGATGATGGATATCCTGAGGGATAAAGACAGTGGCATCAACATGGAGGGCATGTTCATGACAACAGGAAGTATGGTGTCTGTGATACCCACGGATCCTGCTCTGCCAGGGGTTCACTATTTTACAGCAACTCCAGACCCTGAAAGGTCTGTATTCAAACCCTTCGTCTTTGTGAAGAACATTAATGAGCTGAAGGAGACGTCTTCTCCCAGTTACGGTCCAGATGACCCTGTGAAGAAGAAACCCCGCTTCCAGAGCAAGCCTGACCGCAAACATGAGTTGTTTGTCAAACATGAACTTGTGGCTGCCATCGCTGAATCCTACAAGgACAGAGGAAAGAAGATCACAGAAAGTATGAGGCAGctggagaaagaaaagatgACCCAGATGGAGGAGATTCTTTCACACGGCATTGAGGAACCAGATTTTTTGGCGAATCTGTTCTCTAGCTCTGTTCGAGAGGAGATGGCAGTGTACGGAAAAAGCTGAAACCACAAAACTGGTCTCCAGGGTGACGGTAGCAGCATATGCTTCTGCATTTACCTTTTTAGTCAGGTAGAACTACAAACACACTTGTATAATAAATCTGAACGCAACTGAATAGTAGTTAACAtcattgtataaaaaaaaataaggcagCCCAGGATACATATGTTGATGTACAATATGGAATAAATTGTTGACTTTTATGTATTTAATCATATACAGGAAGGAACAAATTCATTATGTGAGACATGATTTGAGGGTTCGgtaataacatttatttttaaacaaatccaTATCCTAAATATGCAGTCTTTGACAGAATTTGTGTGCTACACaatattaaagttttttttaattaaaga

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016805 dipeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640894.1 lncRNA upstream 29309 17605145 ~ 17614067 (+) True LOC120569550
TU167662 lncRNA upstream 144617 17469748 ~ 17498759 (+) True G124671
TU167648 lncRNA upstream 205557 17437361 ~ 17437819 (+) True G124661
TU167604 lncRNA upstream 380550 17261737 ~ 17262826 (+) True G124631
TU167600 lncRNA upstream 385874 17256842 ~ 17257502 (+) True G124627
TU167828 lncRNA downstream 16420 17664672 ~ 17666075 (+) True G124794
TU167831 lncRNA downstream 24003 17672255 ~ 17674455 (+) True G124797
TU167839 lncRNA downstream 39319 17687571 ~ 17687814 (+) True G124804
TU167860 lncRNA downstream 81804 17730056 ~ 17733251 (+) True G124816
TU167861 lncRNA downstream 81804 17730056 ~ 17733251 (+) False G124816
XM_039817411.1 mRNA upstream 8437 17632728 ~ 17634939 (+) True sp9
XM_039818262.1 mRNA upstream 111120 17527950 ~ 17532256 (+) True cdca7a
XM_039818299.1 mRNA upstream 116672 17501695 ~ 17526704 (+) True zak
XM_039818976.1 mRNA upstream 145292 17471984 ~ 17498084 (+) False rapgef4a
XM_039818000.1 mRNA downstream 219610 17867862 ~ 17870159 (+) True hoxd12a
XM_039817999.1 mRNA downstream 225430 17873682 ~ 17878153 (+) True hoxd11a
XM_039817998.1 mRNA downstream 230858 17879110 ~ 17881328 (+) True hoxd10a
XM_039818001.1 mRNA downstream 234214 17882466 ~ 17884616 (+) True hoxd9a
XM_039818004.1 mRNA downstream 247760 17896012 ~ 17899698 (+) True hoxd4a
XR_005641003.1 other upstream 465736 17127881 ~ 17177640 (+) False myo3b
TU167490 other upstream 643844 16997781 ~ 16999532 (+) False col28a2a
TU167128 other upstream 1541765 16099271 ~ 16101611 (+) False dap1b
XR_005640926.1 other upstream 2487490 15138477 ~ 15155886 (+) False trpm2
TU166397 other upstream 3409306 14233332 ~ 14234070 (+) True G123742
XR_005640989.1 other downstream 211908 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other downstream 212501 17860753 ~ 17880726 (+) False hoxd10a
XR_005640988.1 other downstream 212620 17860872 ~ 17880726 (+) False hoxd10a
XR_005640963.1 other downstream 362505 18010757 ~ 18017413 (+) False hnrnpa3
TU168229 other downstream 1054776 18703028 ~ 18704528 (+) True G125079

Expression Profile