RNA id: XM_039817461.1


Basic Information

Item Value
RNA id XM_039817461.1
length 5239
RNA type mRNA
GC content 0.50
exon number 35
gene id mcf2lb
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 21692221 ~ 21742235 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGacttttctttatcttttctttcCCGTTTTCTGACTTGTTGAAGTGATGTGTGTAGCCCATAACGTATGCACAGGTTTGCACCATCATGCGTGCTGAGGCTGAAGAATGCATGTGCGAATGAGGCTGCCTCCTGCTCCACCTCCTCCCCATCTCCATCGTCGGCATCCTGCGCTCTGCATCCCTCTGCGGAGGACTCGTTACTGCAGCTGGGGCTGTCACAGTCGTAGCATCAGCATCATTTCCTCATCCGTCTCTGTAGCCTCCTCGAAAGCATCCATTTCTTACAAGCATCCCAGCACCTCCAAGCTGCacacaccccctctctctcagatCTCTTCTCTTCAGCATCCGTGTGTCGTACAAGACAGCAGCCAGGCAGTCACATCCTGGGCTAGTTTACCCTGCTGCCTCCCTCTCATCCCTTCTGCTCGGCTGGAATTGCCACCACAACAGTTCCCCTCCCCTGTCATCTTCACCATCATCCGCTCTCCAAAGCACCGCTCAGCAAAAAGCAGGCAAGCTGTCTCTTTTTCCCGCAGAAGTGTCTGTTGGCTGGGCAGCTGGTCTTCCACTGTCCCTTTGGAGGATGATCCTGTGGATGAAGACAGAGGAAATGGCCCTGGGGGAGCTGCTGGAGAGACTGAGGACAGTCACTCAAGGCATAGATGAGATCATGCAGCTGGACAGCAGTCCGCTCCGTGCTGCTGACATCACCCCTGACCTCAAGAAGCAGTTTGCCTTCCTTTCAGGAGGTAGAGGAGATAATGGCAGCCCCATCATTGTGTTCCCAGAATTCCCTGCATTTGGAGAGATCACGGACGGAGAGTTTCACAACGTGCTGACCTACCTGACTAGTGTGCCCAGTTTGTCTTCAACGGGCGTGGGTTTCATCTTGGTCATCGATCGCCGGCAAGACCGATGGGCGGCCGTGAAGGGGACCCTGCTTCGTATCGCAGGCTCCTTTCCGGGGAACCTCCAGCTGGTTCTGATTCTGAGGCCCACGACCCTCCTGCAGCGTACACTCTCTGACATCCTTTTCAAGTTCAACAAGGATGAGTTCAAGATGAAGGTGCCGGTGATCATGCTGAGCTCAATAACGGAGCTGCACTCCTACATCGACCGTTCCCAGCTGACCCACGAACTCGGAGGAACACAGGAGTACTGCCATGAGAAGTGGATCTCTCACCGCACTGCTATTGAAGGCTTTGCATTGATGGTAAAGAAAACTGCACAGACCCTGCAGTCGTTTGGGACTGAGCTTGCTGAAACTGAACTCCCCAATGAAATCCAGGCCACAACCATCCTGCTGAGCACCCACACCAACAAGAAAGACAAAATGAAGgAGGATCTGCTGGTGGCTCTGGGTCAGGGCAGCAGGCTGCTGGAGAGCATCAATGAGCCTGTGGTGCGAGACCCCGACCACAACATGAACCAGGATGAACTGGAGAACCTGGCTACAGTGCAAAGACTGTTGTCTCAGCTGGACGAGACAGAAAGGGCTTTTGATGAGTTCTGGGTGAGGCATCAAACCAAACTGGAGCAGTGTCTCCAACTGCGCCACTTTGAGCACAACTACAGAGAGGTGAGGGCTCTGCTGGATCAGGTGTCTGAGAAACTTGCAACCTTCTCTGAAGTGGGGATCAGCCCAGCCCACGCTGACCATATCCTGTGTGAACTCACCACGTAtgaggagagagtgtgtGAGGTGCTGAACAGAGTTTCGTCGTTGGCCCGTGAGGGTGACGAGCTGATCCAGAACTCCCACTATGCTGAAGACTCCATTCAGCCCAAGTGCAGCGAGCTCAGAGCAATCAGTGAGGATGTGAGCACCAACCTGAGGGCCAAGAAGGACCACCTCCTCAAAGCCATAGAGCTGCACCACTGTTTGGAGAGAGCTTCTAAATGGGTTGATGATGGTATATACCTGCTTGCGTCTCAGCCAGTAGACAAGTGTCAATCACATGAGGGGGCGGAGTTAGCCCTTAAGGAGCTGGAGCGTTACCTGGATAACTCAGGCCAGAACCAACTGACAGACCTCAGTACCATCTGGAGAGATTATGAAGCAGTGCTCAACCAGCAGTTCAGAGACCAAGTGGAGAAGGTTTTCCAGAAGCAGTCGTCCATGCAGGAGATGTTTGACAAGAGGAGGGTAAGCCTGAAGAAGCTAGCAGCCAAACAGACAAGGCCGGTGCAGCCAGTAGCCCCCCGACCTGAAGCCTTCATCAAATCCCCTCTCAGCTCGCCCGCACACAGAGCACAGCAGGACAAAAGGTGCTCAGATACAGACTCTGGGAACAACTGTGAGAAAGGAAACGGCCAACTGCAGAACGGAGACAGTAACAGCAGACATGCCTCTCtgtcggaggaggaggagaacctGGCGGTGCTCAGGAGGCACGTTATGAACGAGCTGCTGGAAACTGAGAGAGCCTACGTGGAGGAGCTGCTCTGTGTATTACAGGGATATGCTTCAGAGATGGACAATGCAGCAATGGCTCACCTCATCCCCGCTCCTTTGCAGAACAAAAAGGAGGTTCTGTTCGGCAACATGTCAGAAATCTACCACTTCCACGAGAGGACATTTCTGAGGGAGTTGGAGCAGTACACTGACTGCCCAGAGTTGGTTGGAAGGTGTTTTCTAGAGAGGATGACAGACCTGCAGATTTATGAGAAGTACTGTCACAACAAGCCTCGCTCTGAAAGCCTTTGGAGGCAGTGCTCAGACTGCGCCTTCTTCCAGGAGTGTCAGAAGAAGCTGGAGCATAAACTGGGCTTAGATTCCTACCTGCTGAAGCCTGTTCAGAGGATTACCAAATATCAGCTGCTACTAAAAGAAATGCTGAAGTACAGCAAGAGCTGTGAGGGGGCCAATGACCTGCAGGAGGCGCTGACCGCCATCTTGGGCATCCTGAAGGCTGTCAATGACTCCATGCACCTCATTGCCATTACAGGATATGAGGGTAATATGAGTGAGCTGGGTAAGCTGCTGATGCAGGGCTCATTCAGCGTGTGGACGGAGCACAAGAAAGGTCATGCCAAAGTTAAGGACCTGGCCCGTTTCAAGCCCATGCAGAGACACCTCTTCCTCCACGAGAAGGCCCTGCTCTTCTgcaagaggagggaggagaacgGAGAGGGCTACGAGAAAGCTCCCTCATACAGCTTCAAACAATCTCTGAATATGAGTGCTGTCGGCATTACTGAGAATGCAAAGGGAGACAACAAGAAGTTTGAAATCTGGTGCAACTCCAGGGATGAGGTTTATATTGTTCAGGCGCAAACTGCTGAAGTAAAAACCACTTGGGTAAATGAGATCAGAAAGGTTCTGACAACCCAGCTGGAAGCGTGCAGAGCCAGCCAGCAGAGGGCACCAGATCAGGTTTCCCAGTCCCCTCCTGGGCCCAGCCTCAGTCCATTAAAGTCCGGTAAGGAGAGCTtaaagaggggagaggagaagaaagcTGAGCCCTGCAATCCTGATGCCAACTCCTCTTCGTCGCCAAAGCCAACAGGAAAAGATGAGGCTGTGACAAGCCCTACCTCAGACAGAGCTGCTGTGGCTAAAAAGCGCTTTACTTTACAGGGCTTCAGTAACCTCAAAGCTCAGAAAGAGCCCTCAACCACTGATGATAAAAGTTTTACATTACCATCCATGATGATCTTCCTGTCATCAGGATCTCCCACGAGCCCCGATCACAAGACGAAACGCCAGAGTGACCCCACGCCATTCGGCTTCAAAGATGCAGGTCATCCCCCTCTCCACCTGAGCAGGGCCAGGTGGTTCAGCACCCCTAGTCTCTTACAGACAAAGTGGAGAGGCTGGAACAAGGCCTCCCTGTCGCTGGATGCCTCAGAGGAGCATGACGGCTATTCCAGTGCTGAGGATCCTCTTAACTCTGACCCAGAGGACAACAACGGCAAGAAGCTGTGTGCCGGAAAATATACAGTGATGGCTGACTATGAGAAGGGGGCTCAAGAGCTCTCAGTGAAGAGCGGAGACATGGTGCAGCTGGTCAAGGAGGGGGATGACGGACAGTGGTTTGTACGTAACCTGAGCAGCTCTAAGGAGGGCTGGATCGCAGCTGCTAATCTTATCACGCTCATTGGAAAGTCCAAGTCGTGCCAGTCCCTCACCAGCTCAgAATGCAGTGGCTCTGGAAACCTCAGCACATCGTCCAGCTGCAGTGAGACCTACACAAGCTTCTCTGACATCAAACCCTGAACTCCTCATCACTTCCGCCATCACCAAACTGCCCACGCGAATGCTAGCATCATGTGGCTATCCGTGCTGTATTGCCAACATCGGTACTTTTAAAGAATTTTGTCCGGTTTCCAGGGAAAGCTGtattttttcaatttctttttttaatcgtgCACATGCACCAATTATCTGTTATGTGCACATGTGATAGACTTTATTGTGGTACAATTGTGCAGTGAAGATACAGAATACTGGATAGATAAATACATCACAGACACAGTATAGTAAAGTGATCTTCCTCTAGTCATACACTtgtctgtatatattttttttaatgaagaaCAGAGGATCCCTGTGTTTATAATATAATAGATGTATGAATAGGCCAGCGGGACTGATCTCAGTTAATGCATCTTTTTGTGTTCACATTAAAAGTGGAGAAAGATTGGGGATTATATGTGGATGACCGTTGTCTTTGTGTTCACCCAGGTAGGAGTTTGTCACTGTAAATaaaacacagggagagagatACATGCGTACAGCTTGTTTAGCTTGAATGAATGTTTTCTGAGAGTCTAATCACCCCCTGTCCTCTGCTTTTCCCTTTACATGTGTTAATTTATTTGTAAGAAACGAAAAAgcccacatacacatatatttagTCTTCTTTTCTTACTGGGTTTTtactctcttcctgtctttgtcATTTGTCTCTCTGTTGTCTTTTGAAACCTGTTCTGCCACCAGACTTTGTGTATAAGCTTTTGGTCTAATGGCCTCATGGTCTAACTCTGTGAGTTTTCATGTACGCTACGGTTAAAAATGTTTCTCCTTGTAAATAATCAGAGATGACTGTATAGCGCTAACTTATTATGCGTGGAGGGATCATGTTCTGAATGTAGATATTGTTTATTAATATCCGTCTGTCATGAAATGTTTATTTGAGATGCTATATTGTACATTAAGTATGGTGACGTCACTACTTTGTGACctgtctaattttttttttacataaatgacTTGTTGATAATTCA

Function

GO: NA

KEGG:

id description
K20685 MCF2, ARHGEF14_21_22; guanine nucleotide exchange factor MCF2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169454 lncRNA upstream 210196 21479929 ~ 21482025 (+) False G126000
TU169455 lncRNA upstream 210196 21479929 ~ 21482025 (+) True G126000
TU169447 lncRNA upstream 215471 21473163 ~ 21476750 (+) False G125994
TU169446 lncRNA upstream 216528 21473163 ~ 21475693 (+) True G125994
TU169444 lncRNA upstream 224089 21465910 ~ 21468132 (+) True G125992
TU169684 lncRNA downstream 608792 22351027 ~ 22352358 (+) True G126160
TU169686 lncRNA downstream 613859 22356094 ~ 22357669 (+) True G126162
TU169695 lncRNA downstream 643294 22385529 ~ 22385754 (+) True G126169
TU169701 lncRNA downstream 703093 22445328 ~ 22446121 (+) True G126175
TU169782 lncRNA downstream 792896 22535131 ~ 22537513 (+) True G126246
XM_039818206.1 mRNA upstream 417 21655126 ~ 21691804 (+) True LOC120569986
XM_039818207.1 mRNA upstream 417 21655126 ~ 21691804 (+) False LOC120569986
XM_039818208.1 mRNA upstream 417 21655127 ~ 21691804 (+) False LOC120569986
XM_039818209.1 mRNA upstream 3379 21655131 ~ 21688842 (+) False LOC120569986
XM_039819002.1 mRNA upstream 57464 21619349 ~ 21634757 (+) False sox1a
XM_039817470.1 mRNA downstream 1513 21743748 ~ 21755526 (+) True phf11
XM_039817251.1 mRNA downstream 51039 21793274 ~ 21802571 (+) False trim13
XM_039817252.1 mRNA downstream 57927 21800162 ~ 21805462 (+) False trim13
XM_039817253.1 mRNA downstream 57928 21800163 ~ 21809912 (+) False trim13
XM_039817249.1 mRNA downstream 57930 21800165 ~ 21805462 (+) True trim13
XR_005641000.1 other upstream 3419 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 64769 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 826779 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 833311 20853089 ~ 20858910 (+) True mpc2b
TU168970 other upstream 1170947 20492178 ~ 20521274 (+) False G125627
TU169945 other downstream 1064958 22807193 ~ 22815102 (+) True G126363
XR_005641105.1 other downstream 3125086 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 3887872 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 3897571 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 4374753 26116988 ~ 26129879 (+) True G127165

Expression Profile