RNA id: XR_005640909.1


Basic Information

Item Value
RNA id XR_005640909.1
length 1111
RNA type transcript
GC content 0.50
exon number 7
gene id ccnt2a
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 8793621 ~ 8803104 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACCGGCGTCACATCCGCTTTCTCGATGCCAGTGAATGTTGGAGAGCAATGGCGGCGTGCCGGGGATCCTCGTCGAAATGGTTTTTCACCCGGGAACAGCTCGAAACCACGCCGTCGCGCCGATGTGGAGTAGAACCAGACAGGGAGCTCTCCTACCGACAACAAGCGGCGAATCTGATCCAAGATATGGGTCAGAGACTCAACGTCTCTCAATTAACCATAAATACAGCCATTGTTTACATGCATAGGTTTTATATGCACCACTCTTTCACCAAATTCCATAGGAATATAATATCTCCAACCACCTTATTCTTGGCCGCAAAAGTGGAAGAGCAACCTCGGAAACTCGAACATGTGATCAAAGTGGCACATGCTTGCCTAAATCCCCAAGAACCACCTCTAGACACAAAGAGTAATGCATACCTCCAGCAAGCTCAAGAGCTGGTGATACTTGAATCCATAGTGCTGCAGACCCTGGGCTTTGAAATTACTATTGATCACCCACACACTGATGTGGTGAAATGTTCCCAGCTAGTGCGAGCAAGCAAGGATCTGGCACAGACTTCCTATTTCATGGCTACCAACAGGTTGTTATCCTGCCCCTCCTTTGTTGCACTTTGACTGCACACCATAGCTTCCTGTAATGCAGGGTACCCTTTCAGTGTCCAACGGGCCCTACTTGCGCTGGTGGTTATTGGGATGCTTGCCTCCTCCCCTCAGCTCCCCTCCCTTGTTCAAAGCGAGCGGGACAGGGTGGCTTGTAGCGTTACCGGCCCCAGTTGCAGTGCGGTGTATTGTACAAGGGACCACGTGTTGGCACAGATGGGTTGAATGCAAGGTGTGGAGTGTAGTGGTGCGCTTGAAACCCACATGTTTGTTCGGTTGCGAAAAGTGCATAAttctaaaagaaaaagacacttTGGTAGCCTGAATAGCAGCTAAAGATTTCACAGATGTAAACATTTCTCGTAGAGGTCTTTCCGTCTACACCTCACTACCTTCTGCCTCCAGTACAAGCCCACAGTGATCTCCTGTGTGTGCATCCACCTGGCGTGTAAGTGGTCCAACTGGGAGATCCCAGTGTCCACTGATGGGAAACACTGGTGGGAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165228 lncRNA downstream 7137 8790664 ~ 8790898 (-) True G122859
TU165227 lncRNA downstream 7479 8790317 ~ 8790556 (-) True G122858
TU165200 lncRNA downstream 74453 8679334 ~ 8723582 (-) False G122838
TU165199 lncRNA downstream 114605 8647857 ~ 8683430 (-) True G122838
TU165188 lncRNA downstream 185341 8604526 ~ 8612694 (-) True G122830
TU165233 lncRNA upstream 78353 8881443 ~ 8885620 (-) True G122863
XR_005640855.1 lncRNA upstream 202239 9005329 ~ 9005993 (-) True LOC120569286
TU165343 lncRNA upstream 413720 9216810 ~ 9287702 (-) False G122934
TU165345 lncRNA upstream 413720 9216810 ~ 9287702 (-) True G122934
TU165364 lncRNA upstream 521310 9324400 ~ 9324800 (-) True G122950
XM_039819167.1 mRNA downstream 26113 8701569 ~ 8771922 (-) False ramp1
XM_039819166.1 mRNA downstream 26113 8701569 ~ 8771922 (-) True ramp1
XM_039818759.1 mRNA downstream 212517 8584580 ~ 8585518 (-) True LOC120570417
XM_039817906.1 mRNA downstream 215459 8442118 ~ 8582576 (-) False adarb1b
XM_039817907.1 mRNA downstream 215513 8442118 ~ 8582522 (-) True adarb1b
XM_039817531.1 mRNA upstream 1285 8804375 ~ 8810586 (-) True acmsd
XM_039817175.1 mRNA upstream 84773 8887863 ~ 8901784 (-) True LOC120569317
XM_039817136.1 mRNA upstream 230822 9033912 ~ 9122327 (-) True pth2ra
XM_039818573.1 mRNA upstream 343502 9146592 ~ 9175548 (-) False mrasa
XM_039818572.1 mRNA upstream 343502 9146592 ~ 9175548 (-) True mrasa
TU164950 other downstream 1480442 7181945 ~ 7317593 (-) False tmeff2a
unassigned_transcript_606 other downstream 1618877 7179077 ~ 7179158 (-) True trnas-aga_9
unassigned_transcript_605 other downstream 1653827 7144127 ~ 7144208 (-) True trnas-cga_8
TU164745 other downstream 2116064 6678392 ~ 6681971 (-) False LOC120569614
TU165255 other upstream 196372 8999462 ~ 9000123 (-) True G122878
TU166096 other upstream 3816263 12619353 ~ 12619815 (-) True G123481
TU166598 other upstream 5981471 14784561 ~ 14794497 (-) True G123886
TU166600 other upstream 5981471 14784561 ~ 14789906 (-) False G123886
TU166697 other upstream 6181395 14984485 ~ 14993789 (-) True G123960

Expression Profile