RNA id: XR_005640926.1


Basic Information

Item Value
RNA id XR_005640926.1
length 3893
RNA type transcript
GC content 0.50
exon number 26
gene id trpm2
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 15137587 ~ 15158937 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGTGGAGCCATTTCACAGTGCAACATAACAAGGCAATTGCAGCCTCTCTGTCCATTTGGGATCATGAAGGATTTAGTGCCATTGCAGGATCTGATGGCCGAATCAATGGAAATGCTGCCTCAACAAGAGAATAAGGTTCACCCGCGGGAAATAAGGAAGGAGCTGCGGCAATACCAACTGGAACTAAATCAAGGGATTATTCGTATTAAAAAGTGCTGCGCCTTTGCCGCCTGGACTAAGGAGAACATCCACAAGAAGGAATGCCGCTTCTTTGTAAAAGGTGTCAGAGAGGATGTATGTACGTGTGGCTACTCAAAGACCGACCATGTGGATGAAGCCATCAAGCCAGAAGACTTTACGGGCGAGTCGTgggacagacacaaacatgtcAAAGAAGTGCCCACAGATGCTTTTGGAGACATCAGCTTTGGTGGTTTGGGACAAAAGACCGGCAAGTATGTGCGAGTGTCCACAGACACTAGCCCAGAACTCCTGTACCAGTTATTGACTGAACAGTGGAAACTTTCCCCACCCAACCTGCTGATCTCAGTGACCGGAGGAGCCAAGAACTTTTATCTTAAGGCTAATCTCAAGAACATGTTCCACAGAGGTCTTATTAAAGTGGCCCAGACAACAGGTGCATGGATCATCAGCGGTGGTATGCACACAGGTGTGATGAAGCATGTAGGGCAGGCTGTTAGGGACCACGCCCTGAGCAGCGCCACGCAGGGCCAGATCGTGGCCATCGGAGTCGCAACATGGGGAATAATTCACAACAGGGAGGCTTTGGTGCATTCAGAGGGTTGCTTCCCAGCGCATTATGTGATGAACACTGAGAGCCAGGGCCGACTCTCCTGCCTCGATAACAACCACACCCACTTCCTGCTGGTGGACGATGGCACGCAGGGACACTACGGTGTGGAGATTGAACTACGTAGCCGTCTGGAGAAATGCATCTCTGGAAAGCATCTTGGGAATGAAGGGAGTCACGTGACCAtccctgtggtgtgtgtggttttggatGGAGGACCAGGCACTCTAAATACCATCTACAATGCCATGCTGAATGGTACACCATGTGTGATCTTGGAGGGCTCTGGGAGAATAGCAGATGTGATTGCCCAGGTGGCAGGACTGCCATTGACCCGGGTGACTATCGCCCTCATCCACCAGTTAATGAAAAAGTTCTTTGGCCAAGAATATGAAAACTTTCCCGACCTCAAGATCATAGAATGGACAAAGAAGATTCAGGACATCATCAGGATGTCTCACTTGCTGACAATTTTCAGAATAAGCGAGGACAATCACGGGGATGTGGATGTGGCTATTCTTCAAGCACTACTCAAAGCTTCGAGGAGCAGCGAGTCCCTGGGAATCAAGTGCTGGAAGAGGCAGCTGGAGCTGGCTATAGCTTGGAACCGAGTGGACATAGCTGAGACTGAAATCTTCACTGAGGAGAGCCAGTGGAAGTCCAGTGACCTCCACTGGGCCATGTTCTCAGCCCTGGTTGGCAACAAGCCTCTGTTTGTGAGTCTGCTGCTGGAGAACGGTGTGAGTCTGAGGGATTTCCTGCAGGACGAGGCAACTCTGTGTAAGCTTTACAAATGGCTGCCCAGCTGCATCTTTCTGCGCAAGCTGGCCAAGCGGGTCCAAAGCTGCTGCAGCAGGAGGAAAGCATTCCCCATCAAGTCTCGAGCTCACTCGGAGCAAGGCAAAATGATCTCCATGACTCATGTGTCTGATGAGGTGTGCCACCTGCTGGGAAGTTACACCCAGGCCCTCTACCCCCCCTCCAAAATGACAAACCACTTCAACATGTCTATGGAAACATCTGTATCACTGTCTCAAAGTCCGACGAGTTCCCAAGCTCCACTCAGGGAGGATGTTGCTGCACAGAGGGACCCAGGCAGAGACCTTTTCCTTtgggctgttgtccagaacaatAAGGAGCTGGCTGAAATTGCCTGGGAGCAGTGTAGAGACTGCATGTCCGCCGCTCTGGCCGCCAGTAAGATCCTGAAGACAATGGCAGAGGAAGGAAGTGATGCAGATGAGGCAGAGGACATGCAAGAGCTCGCCAATCACTATGAGAAACACGCCATTGGTGTGTTCAGTGAGTGCCACCACAGCGACGAAGAGCGGGCTCAGAAGTTGTTGGTTCGAGCGTCTCCGTTTTGGGGAAGGACGACGTGCCTGAGGCTGGCACTGGAGGCTGATAATAAAAGCTTTGTAGCTCAGTCAGGTGTTCAGGCTCTTCTGACACAGATCTGGTGTGGTGAGCTTTCAGTGGTCAACCCTGTGTGGAGAGTGCTGATCTGCATGGTCTTCTTCCCACTTATCTACACTAGCTTTCTGGTTTTCAGACATGATGAAGTCATTCAGAGAGATGCTGCGAAGAACGAGGAGAACAAGACAGTGGAGTCAGTAACAGGAAGTACACTTCGAACAAATTATCTTGGCCCCGATCCCTCCAGAGTGCAGCGCCCAAAGCCTCTAGACAGCTGGTCCAGGCTGGTCTACCTATACAGCTCTCCGCAGGTCAAGTTTTACTGGAATATCGTGTCTTACTTCgccttcctcttcctgtttgCTGTGGTGCTGATGATTGACTTCCAGGCCACGCCCTCTGCTGGGGAGCTGCTGCTTTACATCTGGCTGCTCTCTCTGGTGTGCGAGGAGGTCAGACAGTTGTTTTATGATCCTGATGGTTTTGGGTTTCGTAAGAAAGCCAGGATTTACATCAACGACCTGTGGAATATTTTAGATGTTCTGTCCATCCTTCTCTTTGTTATCGGCCTTGCATTTAGgctGACAACTGAGCTGTTCTATGCGGGAAAAATCCTCCTCTGCATCGATTTTGTTGTCTTCTGCCTCCGTCTCATGGCTATTTTCAGCATCAGTAGAACCCTGGGACCCAAAATCATCATAGTCAGGAGGATGATGATGGATATGTTCTTCTTCATGTTCCTGCTGAGTATCTGGGTGGTTGCATACGGTGTGGCCACACAAGGCATCCTCATCCAGAATGACAATCGGCTGGACTGGATTGTCCGAGGGGCAATTTATGAGCCGTACCTCATCATATTTGGGAATTTTCCCACAAATATTGATTATGCTGCATTTGACATAAACTCCTGCAGCATAAATGGCACCAATCCTCTGAAGCCCAAGTGTCCGGTGCTGAATGAAAACCAAACACCAGCTTTCCCTGAGTGGCTCACCATCATCATGCTTTGTATATACTTGCTCTTTGCCAACATACTGCTGCTCAACCTGCTCATAGCCATCTTCAACTTTACATTCCAGCAAGTTCAGGACAACACTGACAGAATATGGAAGTTTCAAAGATACGAGCTAATCAAGGAGTACCACAGCCGCCCTGCTGCCCCTCCTCCTTTCATCATCTTCAGCCATCTTTACCTCTTCATCAGGAACATGGTGATGTGCAGGCCCCCCATCATAAGTAAAGAGTTTAAGAGAGAGCTTCCtcagatggaggaagaggagctgtTGTCCTGGGAGGCCTTGATGAAGGACAGATACCTGCTGTCCACACAGCAGGAGCAGAGCCAGAGCATGGAGCGACACATCTTGGACACGTCTCAAAAGGTTACCACCATAACCGATCGACTGGAGAGGGGAGATGAGACGAGCTCTGCTGCCATGGTGCAAAGACTGGCTCGACTAGAGGAGCAGGTTGTGACCTGATTTTTGGTTATCACTGATGTTGCACCTGTGTCTGTAACATTTGACACTATGCTGTGGGAGCAAAACGCACGATGCAGAAAAGAGATGACACACTTCTTGATGTCGTCCAGTCAGCCAAAGCCCTGCAATGGATTATGGACAGTCTGAAATGTCAGGGGtttgcagcaaaagaaacacaacCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166708 lncRNA upstream 57331 15079454 ~ 15081146 (+) True G123967
TU166709 lncRNA upstream 57331 15080204 ~ 15081146 (+) False G123967
TU166658 lncRNA upstream 123179 15013151 ~ 15015298 (+) True G123931
TU166657 lncRNA upstream 127041 15010978 ~ 15011436 (+) True G123930
TU166647 lncRNA upstream 154062 14984014 ~ 14984415 (+) False si:dkeyp-118h9.7
TU166752 lncRNA downstream 70199 15226085 ~ 15231683 (+) True G123989
XR_005640858.1 lncRNA downstream 87312 15243198 ~ 15248330 (+) False LOC120569306
TU166818 lncRNA downstream 87315 15243201 ~ 15249512 (+) True LOC120569306
TU166819 lncRNA downstream 87315 15243201 ~ 15249829 (+) False LOC120569306
XR_005640857.1 lncRNA downstream 259522 15415408 ~ 15416204 (+) True LOC120569294
XM_039817588.1 mRNA upstream 2784 15086370 ~ 15135693 (+) True LOC120569630
XM_039817589.1 mRNA upstream 2784 15086370 ~ 15135693 (+) False LOC120569630
XM_039817590.1 mRNA upstream 2784 15086372 ~ 15135693 (+) False LOC120569630
XM_039818086.1 mRNA upstream 144643 14976595 ~ 14993834 (+) True si:dkeyp-118h9.7
XM_039818788.1 mRNA upstream 168200 14962270 ~ 14970277 (+) True prmt2
XM_039818122.1 mRNA downstream 4427 15160313 ~ 15196219 (+) False si:ch211-45c16.2
XM_039818124.1 mRNA downstream 18160 15174046 ~ 15196219 (+) True si:ch211-45c16.2
XM_039818123.1 mRNA downstream 18404 15174290 ~ 15196219 (+) False si:ch211-45c16.2
XM_039818125.1 mRNA downstream 28675 15184561 ~ 15196219 (+) False si:ch211-45c16.2
XM_039817719.1 mRNA downstream 41283 15197169 ~ 15207701 (+) True pfkla
TU166397 other upstream 904407 14233332 ~ 14234070 (+) True G123742
TU166312 other upstream 1461131 13635586 ~ 13677346 (+) False cps1
TU166270 other upstream 1784392 13353306 ~ 13354085 (+) True G123633
TU166170 other upstream 1858611 13049758 ~ 13279866 (+) True G123539
TU165581 other upstream 4519781 10607484 ~ 10618696 (+) False lrp1bb
TU167128 other downstream 943385 16099271 ~ 16101611 (+) False dap1b
TU167490 other downstream 1841895 16997781 ~ 16999532 (+) False col28a2a
XR_005641003.1 other downstream 1971995 17127881 ~ 17177640 (+) False myo3b
XR_005640989.1 other downstream 2704274 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other downstream 2704867 17860753 ~ 17880726 (+) False hoxd10a

Expression Profile