RNA id: XM_039817598.1


Basic Information

Item Value
RNA id XM_039817598.1
length 3911
RNA type mRNA
GC content 0.40
exon number 14
gene id LOC120569635
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16288239 ~ 16305884 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAAACAAACTGGGCTGGGCAATCGAAGTTGGGACAATTTACGGAGGTTTCTGTTGCCGGATAGTCGACGACAATAAGGATATGTATACAGCTAATATGCATAGCATCCTATCTTTGTGTCATTTAGCGTAGTAAGGAGTCTATCCATGTCAAATAATATTCTACTTATACGAGGAGTTTAATGTATTTCGCTAGAAAATTGAACCTTAACTGAAAACAAACTAACGTTACCCTCCCTATTTGAACTGAGGATGATTTTTGCTAATACTGGAAACCCACTAAGGACTCCGTATCGCAAACAGTAGTTTCGCAccttgctgcagtgatgtacAAGTGTACTCCAGGGTCTATCAGTACACTGTGACATCAGAAGCACACTTCTGACGACACCCAACCACACCCATTAGGGATGCCGGTTGTGGTCAGAGCCATCTGTTGCCTCATCATCACACCCCATGGCTCCACCCAGCCCAAGCAAcaatagcagcagcagtagcactACAGGTTGGGACCAGCTCAGCAAAACAAACCTCTACATCCGAGGCCTGTCCCCTTCAACCACAGACCATGACCTGGTCAAGCTCTGTCAGCCGTATGGCAAAATTGTGTCAACAAAGGCCATCCTGGACAAGACTACAAACAAATGCAAAGGATATGGATTTGTGGACTTTGACAGCCCCACTGCAGCTCAGAAAGCTGTGGCTGCCCTGAAGACCACTGGTGTCCAAGCTCAGATGGCAAAGCAACAGGAACAAGACCCGACAAACTTGTACATCTCCAATTTGCCTATGTCAATGGATGAGCAGGAACTGGAGAACATGTTAAAgcactttggccaggtcatctcCACACGCATCTTGAGGGACTCCAGTGGAGGCAGCAGAGGAGTGGGCTTTGCAAGGATGGAGTCAACTGAAAAATGTGATGCAGTCATTTCTCACTTCAATGGAAAGTTTATTAAGACACCTGCAGGTGTTCCAGCACCATCTGAACCTTTGCTGTGCAAGTTTGCTGATGGTGGacagaaaaagcgacaaagtCTGAATAAATTTGCCCTGAATGGTCGCGGTTGGGGAAGGGACATTGACTCCAGACTGGCCGGAATGACACTCACATATGACCCCAGTGCAGCTGCTATGCAAAATGGATTTTTCCCACAGGCATACAGTATTTCAAACCGGATGATTGCTCAAACGTCCATGTCTCCTTACATGTCTCCAGTTTCAACATACCAGGTGCAGAACCCATCCTGGATGACTCATCAACCCTACATTATGCAGCACCCAGGTACTGTGATATCGCCCTCTATGGACCCATCTATGTCACTACAGCCTACTTCCATGATGGCCCCTCTTGCACAGCAGATGAGTCACCTCTCTATGGGCAATGCAGGAACGTTTATGGCCGCAAACGCATCTATGCAAGGAGCATATATCCCACAGTATGCCCACATGCAGACATCAAATGTTCCTGTAGAGGAAAATGGTGCACAGTCACAAGACTCATCCAGCAATCATTCCCCATATTCCTACCAACAAACCAAGTAGTGCTGAGGTAACATTTGGACAACTGCTAAAACAATCATGTCTACAAATGCAACGGATGCTAAGGATCTTTTCACTGTTTTGCACAGGTTCTGCAAATGTTTAAGTGAGACTATTTTTGGTATCATTGTCATCAAATGAtttgaattatatatatatatatatatatatatatatatatatataaaagttttaaaaagttttattttcatactagaaaatgtttattttttaccaaGAATTGCCGCAGGATCCAAGGAAGACTAGTTGTTAAAGTGCATGATAGTAAATATATGTCTTTTGTTAATATTTccagatttctttttcttctgaaGACTTTTTTCagtcagacattttgaaaataatgtttttgtgcTTGCTGTGTGAGTGTTGCTATGGTGAAGTGTTATGTGTTGTTTTCTTGTAAAGTGATTTCTCTTAGTAATTTAGATTGATCTTGCTGTCTGATTAAAATTTGCCTTCATAGTTTTGATACAGTAGTTGTACAAAAAACACCACAGAGAGCAGCAATaagcaaaaaaaatgttatgagctattgccttgccttgcctatgtaggactttttttttttaaggagatCAATGTGTTGTTGCTTTTCCCCCTCCCAAAACTGCTAGAAAAGTAGAAGAAATTTTAGATTTGAAATCAAATGTCTCCACATCTGATAATTTTATTGGATGTAATATTTATTAGTAAGAATACCTTACATGTTTCTGGATGTTGGAATGTGTTACATTTTGAATCTTGCCTTGTTGATTATTTTAGAATAGCCGAAATTGAACTTGGCAGGGTGGGGAAATGAGAAGGgcaaatgtattttgtttgtcggatgtgttttttgtcttttttgggTGATGTTAATTGTTATTTTGATGGGGTgtgtctttttcatttttatttgaaaaaactaACAGGAAAACAGACTTATGAttgtgcaaaaaagaaaaactcatCAAAGCCTTGTAATAGAACTTAGGGCAATAGTTCAGCGAGTTGGGGGGGGTAATATtagatgtgtgtatgttattgAACCTCGCTCTTTAAtaggaaacaaacaaactaGGCACTTTCAATTGTAGTTTACTTCACCAAAGATTGTGAGCTAGTACACTGAGGAAATTGTCTGTCTCTTTAACCAGGACACAAGTGACTCTGCGAACTAGATTGCAGTTTGGACAGTGTGCCTTTTTTGTACAATTACATTCAGTTTTATTAGGTAATTGTACAGTACGGACACGCACAAGCATGAAGGAAGGCCTGGATCcaacaagtgccacacattaaTTTCATACTTGCAGAATAATGGAAATTGTAACATTatagtaaaataaattaaactatgAAAGGACAGTGCTATGAAAAGTcagataatttttttaacagtggATTACAGCAGGCTTTTTGATTATGGTATCCTCCAATGAGCCTGTGATTCGACCTGGTGGTCAATCAGACCAGTTATCTACCTCAGagttttctttctcctctgtaCTAGGTCGGGTTAGCAGGTCCAGCCCGCCCTTCCAGACCAAACGCCACGCTCAGGAGCTGGCCACATACAGCTGTTTCCTTATAGGTTGTTTTGAATACTTTGGGATTTTCTTCAAACCAATTTTTTTATGATGTATTGTTGTAATCATTAGGGTGGGCAACAACATGTTTCTACTCATGTTCACACAttcagtttcagttttaaaaGAGCTGCTGCTTTTATGGCAATAAATTCCAGAGCAGGGTTCAAAATAAGCAATATCcactagccaaatgctggtaaaatatgcaagtggctggtagattagTTCcgctcaccagccaaaaaaaacaacaatggtaatctattgagtggctggtaaaatgtgaacattcactagccatttggctgatGGACgacaaagttaattttgaatCCTGTTCCAGAGGctgatttaaaatgttaaagacCAATAATGACAACAAAGCGTTGTGGTGTTCAATGGATCTGTGCTCCTTTTAAACAAACATGCTTGTTGCTTTGTCGAGGGTCTAGATGTATTCGCAGCAGCATTTCCTCTGTAGTTAGCTCGAGTGTGCAACAAATGTAAAGGGTCGCTGTGATTGTACTTGAGATTTCTGTGTAATGCCTGAGACTGAGAAGTAATACTGTCTTGTGAGGTTAATGCTGCTAGTGGTGTCTGAACCATGTGCCATAGTATCTGGGTCAAGAGTTGCAGAGGTGCACATAAGAAGAATTGCTCATATAAGTAACCACCATTTTGAACAGTCATTAAGTtatatgaaaaaagttctaaTTTATGAAGATTGTTGTACAGACAGCTTGAGGAAATAAGAGATTTTCATGGAGCTATA

Function

GO: NA

KEGG:

id description
K24990 RBMS; RNA-binding motif, single-stranded-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167187 lncRNA downstream 7361 16280584 ~ 16280878 (-) True G124324
TU167167 lncRNA downstream 72762 16207699 ~ 16215477 (-) False LOC120570587
TU167158 lncRNA downstream 185884 16102156 ~ 16102355 (-) True G124304
XR_005640867.1 lncRNA downstream 386550 15865076 ~ 15901689 (-) False LOC120569338
TU167219 lncRNA upstream 16601 16322485 ~ 16322657 (-) True G124346
TU167223 lncRNA upstream 39404 16345288 ~ 16357884 (-) True G124350
TU167229 lncRNA upstream 75473 16381357 ~ 16381694 (-) False LOC120570068
TU167243 lncRNA upstream 95874 16401758 ~ 16402030 (-) True G124366
TU167261 lncRNA upstream 181946 16487830 ~ 16488496 (-) True G124382
XM_039817599.1 mRNA downstream 2974 16280938 ~ 16285265 (-) False cd302
XM_039817600.1 mRNA downstream 3220 16280938 ~ 16285019 (-) True cd302
XM_039818982.1 mRNA downstream 12676 16223335 ~ 16275563 (-) True LOC120570585
XM_039818991.1 mRNA downstream 65503 16207690 ~ 16222736 (-) False LOC120570587
XM_039818445.1 mRNA upstream 72604 16378488 ~ 16380650 (-) True gcgb
XM_039818294.1 mRNA upstream 75366 16381250 ~ 16389894 (-) True LOC120570068
XM_039818444.1 mRNA upstream 84157 16390041 ~ 16401166 (-) False ifih1
XM_039818443.1 mRNA upstream 84157 16390041 ~ 16401166 (-) True ifih1
XM_039818467.1 mRNA upstream 97678 16403562 ~ 16443170 (-) True LOC120570230
TU167157 other downstream 186646 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 870967 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 1294450 14984485 ~ 14993789 (-) True G123960
TU166598 other downstream 1493742 14784561 ~ 14794497 (-) True G123886
TU167228 other upstream 72725 16378609 ~ 16380765 (-) False gcgb
TU168094 other upstream 1807226 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 1807626 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 1807688 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 1850848 18156732 ~ 18163749 (-) False prkra

Expression Profile