RNA id: XM_039817600.1


Basic Information

Item Value
RNA id XM_039817600.1
length 1960
RNA type mRNA
GC content 0.44
exon number 6
gene id cd302
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16280938 ~ 16285265 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTAGCTACGGTTGTACGCACGTACCCGTTTAAATTAGCATTGCGTAGGCCTGTGTTACAGCAAGTGCCCTTAACTCTTTGtactttgtatttgtgtttgttttgtgtctgaTTTCAGTAGCCTTGACTAGACATACAGTGTTTCACTGTTAGCAAACCAATTGTTGCACTGAATGTCGACGCTGTTGTTTTGCATATGGCAACATAACTTATGAACCAAGCTTGACATGTCACGTAAAGTTGTGTGCTTCCCTATGTTGCGAAACCCACaagcaaataaaacaaatgtaaaaccCGTGTTTTCCCTTTTTAGAGGTGGGTGTATTTCAAGGCAGAATTTTTTTAGACGTTGCCTGAAGGTGCCTCATTTGGCCCGGTAACGTCATGTGGAGGAATGACTAGCGATGTCGCCAATCAAAAGGGATACTAACTGGAAAAGTATTAACTGTAAAGTGCCACTTAAAACACTGCTACAAAGATGAGACCTCTCAGATTAAAGCAACATTTGTGTAAGATAGTGTATGAGACCAGTGTTGGATTGTAGCCtaaACTGCCCTGCAGACGGACGCACCTGGGTACCATTTGGAGGCGGATGTTACTACTTTGTCCACGGAGAAGAAGACACAATCAAAAGCTACACTTTTGAAAGAGCAAAAACACTCTGCCAAGGATTTGAGCTTTTGACCATCCAAAGCGCTGAGGAGAATGACTTTGTCATTAAATATAGCCCAGCAGTGTGGAAAAACAATGTCAACGTGTGGCTGGGAATGTATTATGACACAAACAGTGAGGACATGAGGTGGTTCGGTGAGCAACCTGTAGGATTCAGTAACTGGGAAGACATCTTGTCTTCGTCAGACCTTTTGCCCTTGGATACGTGTGTGGCTCTGCACAGCAACACAGGAAAGTGGGAAAATGTCAGCTGCCTGGAACAGGCGGAGAATGGAGTGGTCTGTGAGACAAATCAGAagGCAGAGGAAGCCAAACCGAAACCCAGCGCGCTGCTGTCCGCCCTGGTCATTCTCAGCGTGGTGGCTATCATGGGAGTCTCAGCAGTCATTTGGTTCCTGCAGCATAAGTACAACCTCGGCTCCACTATCCTCACGGCATTTGAGTACCACCCCCCGTTCCGAGTCCTGGACACAGACCGGTCCTGTCTGGTGGAGGCTGAGGAGACTGACAGCGTGCCATAGGAGAACCTTCCCTCTGTTCCACAACAGGAAGCACCAGGCTCACTGGGTAGAGAAAACGGTTACTGAAATAGTTTTGGgttaacacgttacacacatgACTCAGAATAATGTATAAACTGAGGTCAGGCTTACTCGAATACTAACGTCTCACTGTTGCACATTAACATCTCACTGcttctggtttttttttttgtcatttgcaCTAATGAACAATCATCTGTACATTTTCCAGACTGGTGCATCAGCAACTTTGCAGTCTGGTCCACGTGTCATGTGTAACATTATTATCAAGCACTACACATTCCTTGATAACCTTTGGTATCATTATTTCTCTCTTGCATATTAAAAGTAACCAACTATTGCTCATGGAAGGGATTAAATAAAGAGCAAAGCTTTCATACTTTTTGTGAGCAGACAGAAATGCTCAGCGATTTAGTATTGCATTGCCATAAACCTTGAGGGACTAAAAAGAGGGAGATTGAAATAAGAATGGGCAATTGATGCAGCAGAGAGTGAGACACCCTGATGTTTAGTCCCTAGTGTGTATCAAGCTCCAAAAATGCTGGATTCTACATTTCACATAATGCAACCAATCGCATGCTTCCATTAGACCTTGACTGCCTGGTAAATGCTCATGTCTTTTAAACCAGTGGAGTCCATTTTACGCAGTATTCAAAGAAACAGGAATTCTCAATTGCAGGCTATCAAGGGCACATGTAAATAGCTTGATCCGAACAAAAACCCAGCTTGAGTTTGAACATGTAAT

Function

GO: NA

KEGG:

id description
K06722 CD302; CD302 antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167187 lncRNA downstream 60 16280584 ~ 16280878 (-) True G124324
TU167167 lncRNA downstream 65461 16207699 ~ 16215477 (-) False LOC120570587
TU167158 lncRNA downstream 178583 16102156 ~ 16102355 (-) True G124304
XR_005640867.1 lncRNA downstream 379249 15865076 ~ 15901689 (-) False LOC120569338
TU167219 lncRNA upstream 37466 16322485 ~ 16322657 (-) True G124346
TU167223 lncRNA upstream 60269 16345288 ~ 16357884 (-) True G124350
TU167229 lncRNA upstream 96338 16381357 ~ 16381694 (-) False LOC120570068
TU167243 lncRNA upstream 116739 16401758 ~ 16402030 (-) True G124366
TU167261 lncRNA upstream 202811 16487830 ~ 16488496 (-) True G124382
XM_039818982.1 mRNA downstream 5375 16223335 ~ 16275563 (-) True LOC120570585
XM_039818992.1 mRNA downstream 58202 16207690 ~ 16222736 (-) False LOC120570587
XM_039817597.1 mRNA upstream 3220 16288239 ~ 16305884 (-) False LOC120569635
XM_039817596.1 mRNA upstream 3220 16288239 ~ 16305884 (-) False LOC120569635
XM_039817598.1 mRNA upstream 3220 16288239 ~ 16305884 (-) True LOC120569635
XM_039818445.1 mRNA upstream 93469 16378488 ~ 16380650 (-) True gcgb
XM_039818294.1 mRNA upstream 96231 16381250 ~ 16389894 (-) True LOC120570068
TU167157 other downstream 179345 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 863666 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 1287149 14984485 ~ 14993789 (-) True G123960
TU166598 other downstream 1486441 14784561 ~ 14794497 (-) True G123886
TU167228 other upstream 93590 16378609 ~ 16380765 (-) False gcgb
TU168094 other upstream 1828091 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 1828491 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 1828553 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 1871713 18156732 ~ 18163749 (-) False prkra

Expression Profile