RNA id: XM_039817654.1


Basic Information

Item Value
RNA id XM_039817654.1
length 2661
RNA type mRNA
GC content 0.43
exon number 10
gene id ccdc173
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17049924 ~ 17058311 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGAGTAAAAAGAAAAGCGCGTTCCAATAATATTGTGACCTGGTCTGACTCCCGAATCCCTATGTCTTCAGTTGAGGAAGTCAGCAGGATGATCCAGCCACCAGACCTCCGGCAAGTCACTGTCTTAACCAAGGCTGAATGGCTGAGGATTCAAGATGAAATAAACCGGCTTAATAAAGACAAGGAGAGAACGAGAGAGGCagcaaaacagagagagacccTTCACTTGCAATCAAAAGAAGTGGTGAAACTGTGGTCCAATACCATCGCTGGTCAAAGGCAAAAAAAGCTAGAGGCAAAGAAGCTTCGGGAGGAGattgaggaggagaaaaggaaaTTGACTGATAAGGAAGAGGCCAAATATCAGGAGCAACAGCGGAGAGAGGCCATTGAAAAAGCCAAGACTCAGCTGTATTATCAAACCGACCGTGTTAAAGGATTACATCGTGCACTCTTGCTGACAGAGGTGCTGAAGGAGAGGGAAGCACAGATCGAACTGAGGAAAAGAATCAAGAGTGCCTCTAAAGATGTGGACAAAGAATTCCTGAATATGGTAGAGAGCAGAGAGGATGAAGCCTTGAGACAGGAGCAGGAGAAAGCACTTCAGAAAAAGCTTGAGAGACAGGCTGTGGCAGAGCAGCTAAAAAATCAGGTCAAGGAAAATAAGCTACTGAGAGAGCGACAGAAGATGGAGAACAAAAAGGACGGAGAGGAAACCCAACGCCTTCAAGAGCTCTACCAATGGGAGCAAAGAATGGAGGAAGAAAGACAAGCAAAGCTGAAGAGAGACATTATGCATGCTCACCTGGAACATATAACCAATAGAGAGCTCATAAGAGCAGCAGATGCACAAAAACAGAATGCTGAAGAGGAGCAAAGGAAACTTTTTCTCtctgcaaaacaaaaaatgatgaAGTTAcggaaagacaaagaaaaggaaTTGTTCAGAGAGGCCCAGATGCGCAGAGAGAGGATCATGGACAAGCTGACCGTCACACAGCAGGAGCAAACTGACACCGAGGAGCAGAGGACTGCAAAGGCTGTCGCTGAGCGGGATGCAAAACAGGCACAGtggcagagggaggaggaggaaaagaaggCTGCGATGTTGGAGTCGATTGCTGCACACAGAGAATTCCTGAGACTAGAAAAGGAGCAGAGGGACAAAACGGACCAACAGAACACCCGAGACAGACTTCAGGCCAAGAAACAGGCTGACAGAATATTTTCCGAGAAACAACAACTGAAGACTCAGAGGATCAAGGAAGATGGACGAAAACTACAAGAATTCCATGCCACACAAATGGCTCAAAAAAGTGCCCGGCATCAGCAGCTGAGAAGAGAGGAACATGAGTTTGAAGTGAAGACCGCAGAGCTCATTGCTGAAGAGGAAAACCTGTTTCAACAGTATTCACGGCACATCATCAGCGCAGCGGCGGAGGCTCAGCGAAATGTGTTTCCACTTTGCAAAGCCGCAGGGGAAGGGGTTGGAGGAGGGCTCTGTCCCATTTCTAACGGAGTCAAGCCTAGATACCTCGTTCAGGACCGTAGTGGTGCTCAAATGCCCAAATATGTCTCTGGTGCCACCCAGAACGTTAAAAAGCTTAATGAGGCCGTAGATATTCATGATACAAAGCGGAGACTTGGGTTTACATGGTCATAGGTCGCTCCCAGCTGGCAATTCTGGTTTCATGAGTGTTGAACACACTTAACACTAAATGTTTTCATAGCATCCTTAAGATGTTTTGACAGAGGCTGTCTGAAATCACTCCCTCGCTTACTCATTTGTTATTCCGTTTTTAATAGACACTCAATAGTGTGCTGTGTAGTGGATAGTAAATTGGGACATTGGGCAATTGTGAAGTCATTATATTGTGTCATCCCTTGCAGGGGTAATGCCGCACGGTTTTAAAATTTAGAGTTAAAGGAAATGTATATGAACCATAACATATCTGGTTTGAGTTAAGCCAGGGAGTCCTTCCCATCTCTCTCCATTTCCTCTCATCTCACTAATAAAAGGCATGGAATTGCCCAAAATATACTATTTACAAAAGGTGGCCTCTATGTCATGGAGACTACTTTCTTTGTCCAGTTGTTGAGATGTTTGAGAGCAAGATATAGTGCATCATTGTCACGTATAGTACACCATTTGGTAAACGGAGTGATTTTGGACACAATCAAAACCTTTTGCATGGATGTTCTACAGGTACATGATGGAGAGGAATACGTGCTTTAGACAACGTTGTCTGAATGTTTTAGTCAGAATGCTCTACAGTTTATTACAAACTTCTGTAACGTTCCAGACATTccataatgaaacatgaaaACTTGATCGCTACAGTGAGATTAATTCCAGACATATTTGtggtttgaaataaataaaatgttctgtGAATATCGTGTATCAACTTACCCAAGTAAAGATGACTCTAAAAACATGGACTCTAGTTAAACACTGAACCAAGCAATGAATCACCACTGCAGTTAACTGAACCTGACACTGGATGACAAAATGTTGACAGTACAGTATGAATTTCCTGTAATAATGTTATCACTGTTGATTATTGTAATTTTGGATGCTAATAATGTTTGGGCCTCCAATAGATAGATTGCATTTGTGACAGGATTTACAGAATATTAAAACAATTGATTAAAATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167539 lncRNA downstream 7552 17040193 ~ 17042372 (-) False fastkd1
TU167536 lncRNA downstream 8906 17040193 ~ 17041018 (-) False fastkd1
TU167537 lncRNA downstream 8906 17040193 ~ 17041018 (-) False fastkd1
TU167538 lncRNA downstream 8906 17040193 ~ 17041018 (-) False fastkd1
TU167505 lncRNA downstream 22734 17026334 ~ 17027190 (-) True G124561
TU167546 lncRNA upstream 4395 17062706 ~ 17065537 (-) True G124590
TU167568 lncRNA upstream 36132 17094443 ~ 17099028 (-) True G124601
TU167573 lncRNA upstream 66570 17124881 ~ 17127544 (-) True G124606
TU167579 lncRNA upstream 117845 17176156 ~ 17180098 (-) True G124612
TU167672 lncRNA upstream 169588 17227899 ~ 17230116 (-) True G124679
XM_039817651.1 mRNA downstream 8985 17035373 ~ 17040939 (-) True fastkd1
XM_039818297.1 mRNA downstream 64785 16974305 ~ 16985139 (-) True LOC120570071
XM_039818662.1 mRNA downstream 73757 16938250 ~ 16976167 (-) True lrp2a
XM_039818663.1 mRNA downstream 73757 16938250 ~ 16976167 (-) False lrp2a
XM_039818665.1 mRNA downstream 144784 16895676 ~ 16905140 (-) True abcb11a
XM_039818482.1 mRNA upstream 16047 17074358 ~ 17078125 (-) False mettl5
XM_039818480.1 mRNA upstream 16063 17074374 ~ 17078125 (-) False mettl5
XM_039818481.1 mRNA upstream 17571 17075882 ~ 17078124 (-) True mettl5
XM_039818005.1 mRNA upstream 192071 17250382 ~ 17271042 (-) True tlk1a
XM_039818212.1 mRNA upstream 213429 17271740 ~ 17277883 (-) True mettl8
TU167228 other downstream 669159 16378609 ~ 16380765 (-) False gcgb
TU167157 other downstream 948331 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 1632652 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 2056135 14984485 ~ 14993789 (-) True G123960
TU166600 other downstream 2260018 14784561 ~ 14789906 (-) False G123886
TU168094 other upstream 1054799 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 1055199 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 1055261 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 1098421 18156732 ~ 18163749 (-) False prkra
TU168240 other upstream 1637169 18695480 ~ 18699802 (-) True G125089

Expression Profile