RNA id: XM_039817683.1


Basic Information

Item Value
RNA id XM_039817683.1
length 1582
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC120569679
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 14617708 ~ 14621463 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATATAAACCCTgactctccctctcctccgcACTTCTGCCTTGTATCTGAATCCTCAACGTCAGTCGAAGGACAAGCAGACACAATGCGTGAGTGTATTTCCATGCACGTCGGCCAAGCCGGAGCCCAGATGggcaatgcatgctgggaactGTACTGTCTGGAACATGGGATCCAGCCAGATGGACAGATGCCCAGTGACAAGACTATTGGAGGAGGAGATGACTCTTTCAATACCTTCTTCAGTGAGACAGGAGCAGGAAAGCATGTTCCCagagccatctttgttgacctGGAACCTACTGTCATCGATGAGGTGCGTACAGGAACCTACCGGCAGCTGTTCCATCCTGAGCAGCTGATTACAGGAAAGGAAGATGCTGCCAACAACTACGCCCGTGGACACTACACCATCGGCAAGGAGATCATTGATCTGGTTCTTGACAGGACTCGTAAACTGGCTGATCAGTGCACTGGCCTGCAGGGATTTCTAATCTTCCACTCTTTTGGTGGAGGCACTGGCTCAGGTTTCACCTCCCTGCTGATGGAGAGACTCTCTGTTGATTACGGAAAGAAATCAAAACTTGAGTTTGCGGTCTACCCAGCCCCTCAGGTCTCCACTGCAGTGGTGGAGCCTTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCTGACTGTGCCTTCATGGTGGACAACGAGGCCATCTACGACATCTGCCGCAGGAACCTCGATATTGACAGGCCGACTTACACCAACCTGAACAGGCTCATTGGCCAGATTGTGTCTTCAATCACAGCCTCACTTCGCTTTGATGGAGCCCTGAATGTTGACCTGACAGAGTTTCAGACCAACTTGGTGCCTTACCCTCGTATCCACTTCCCTCTGGCCACTTATGCTCCAGTCATCTCTGCAGAGAAAGCCTACCATGAGCAGCTGTCAGTTGCTGACATTACCAACGCTTGCTTTgagccagccaatcagatggtGAAGTGTGATCCTCGTCATGGTAAATACATGGCCTGCTGTCTGCTGTATCGTGGTGATGTAGTGCCCAAAGATGTCAACTCTGCCATTGCAGCCATCAAGACCAAACGCACCATCCAGTTTGTAGACTGGTGCCCCACAGGCTTCAAGGTGGGCATCAACTATCAGCCTCCAACGGTGGTTCCTGGAGGAGACCTGGCCAAGGTGCAGAGAGCTGTGTGCATGCTGAGCAACACCACAGCCATCGCTGAGGCCTGGGCCCGTCTCGACCACAAGTTTGACCTCATGTACGCCAAGAGAGCCTTTGTCCACTGGTATGTTGGGGAGGGCATGGAGGAGGGAGAGTTCTCAGAAGCCAGAGAAGATATGGCTGCCCTGGAGAAGGATTATGAAGAGGTTGGCACTGACAGCAtgggagaggaggatgaagagggagAGGAGTATTGAAGGGCCAAACATCATCCTGGCTTTACTATCACATATTCCAAACGTTATCATGAATGCAATACATTCCCAAAAACACTCTGATAACCTGCGATGGTGATCAATATCAGTATTATCAATAAAATGTTCTCATGAACCTATTAAATGA

Function

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0007017 microtubule-based process biological_process
GO:0042552 myelination biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641043.1 lncRNA upstream 202571 14414287 ~ 14415137 (+) True LOC120570330
TU166423 lncRNA upstream 204085 14413388 ~ 14413623 (+) True G123765
TU166417 lncRNA upstream 233357 14384119 ~ 14384351 (+) True G123759
TU166386 lncRNA upstream 455066 14161682 ~ 14162642 (+) True G123731
TU166380 lncRNA upstream 721580 13894280 ~ 13896128 (+) True G123725
TU166540 lncRNA downstream 51673 14673136 ~ 14673339 (+) True G123848
TU166547 lncRNA downstream 98665 14720128 ~ 14720815 (+) True G123855
TU166551 lncRNA downstream 133065 14754528 ~ 14754749 (+) True G123859
TU166629 lncRNA downstream 313733 14935196 ~ 14935409 (+) True G123907
TU166637 lncRNA downstream 329621 14951084 ~ 14955541 (+) True G123911
XM_039818900.1 mRNA upstream 1461 14614357 ~ 14616247 (+) True LOC120570509
XM_039817647.1 mRNA upstream 129561 14460890 ~ 14488147 (+) True vwc2l
XM_039817646.1 mRNA upstream 129561 14460890 ~ 14488147 (+) False vwc2l
XM_039817648.1 mRNA upstream 129561 14460896 ~ 14488147 (+) False vwc2l
XM_039818292.1 mRNA upstream 921374 13635554 ~ 13696334 (+) True cps1
XM_039817689.1 mRNA downstream 563 14622026 ~ 14633195 (+) False dnajb2
XM_039817687.1 mRNA downstream 604 14622067 ~ 14633195 (+) False dnajb2
XM_039817685.1 mRNA downstream 1437 14622900 ~ 14633195 (+) True dnajb2
XM_039817688.1 mRNA downstream 1437 14622900 ~ 14633195 (+) False dnajb2
XM_039817686.1 mRNA downstream 1437 14622900 ~ 14633195 (+) False dnajb2
TU166397 other upstream 383638 14233332 ~ 14234070 (+) True G123742
TU166312 other upstream 940362 13635586 ~ 13677346 (+) False cps1
TU166270 other upstream 1263623 13353306 ~ 13354085 (+) True G123633
TU166170 other upstream 1337842 13049758 ~ 13279866 (+) True G123539
TU165581 other upstream 3999012 10607484 ~ 10618696 (+) False lrp1bb
XR_005640926.1 other downstream 517014 15138477 ~ 15155886 (+) False trpm2
TU167128 other downstream 1477808 16099271 ~ 16101611 (+) False dap1b
TU167490 other downstream 2376318 16997781 ~ 16999532 (+) False col28a2a
XR_005641003.1 other downstream 2506418 17127881 ~ 17177640 (+) False myo3b
XR_005640989.1 other downstream 3238697 17860160 ~ 17880726 (+) False hoxd10a

Expression Profile