RNA id: XM_039817686.1


Basic Information

Item Value
RNA id XM_039817686.1
length 3535
RNA type mRNA
GC content 0.43
exon number 9
gene id dnajb2
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 14622026 ~ 14634583 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCTGACGACGTTTCCAAACACGAGCATGTTCCAGAAGCTCTATTTTCCTCTCTCAGCTGATAGTGACGTAACGCGTGCAGCTTAGACCCGCACACAAGGCAAACAGGGTTAACTGACTGCTTGTTTTCCCGGTGGTGGGGACCGTAGAGTAGACCACTGAGGCACAGCGGTACACTGCGGACATATTGTGTTGTCGAAAATATTTGTGTCGGGGCGGTGGAGAGGAGGACTGAAGGAGGAGGCTGTCTGTGCGGCTGTCACGAAGAGAGGGGGAGCACATACCAGAGGGGCAGTGCAGTGAGGAGTGACAGGAGGCAACATGGTGGATTACTACAACGTTCTGGGAGTGTCCAAAACAGCCTCTCAGGATGACATCAAGAAAGCGTACAGGAAACTGGCACTGAAATGGCATCCAGACAAAAATCCAGACAACAAGGATGAAGCAGAGACAAAGTTCAAAGAACTGGCTGAAGCCTATGAAGTCCTGTCTGACACGAGCAAGCGTGAAGCATATGACAGATATGGAAACGACAGAATGGGACACACAGGGTCCTCCAGCTCAGACTTTTCATCAGATTTCCCAGGATTCACCTTTACATTCCGCAACCCAGATGATGTGTTCAGAGAGTTTTTTGGCGGCCAGGATCCCTTCGCTAACTTCTTTGATGACTTCTCATCCTTTGGAGGCTCATCCTCTCGCCTCGGCCCCAGtcgcttcttttcttttccttcagcAGGAGTTGATtttacctccttctcctcttcctttgGTGGTCTGGATGGGATGGACAGCATGGGTGGAGGGATGGGCAACTTCAAATCAGTTTCTACCTCCACTCGCATCATAAATGGCAAACGCACCACCACCAAGAAGATAAAGGAGAACGGGCAGGAAAGAACAGAGATTGAGGAGGATGGGGTGTTAAAGAGTGTCCTAATTAatgGTGTGGAGGATGAAATGGCCCTCGCACTGGAGCTCAGTCGACGAGAGGGACAGCCCCGTCACTCACCTCAGAAGCCACAAATCCAAAACAGATCACCTGCCGAGTATGACAGATCCCGCCCCAGCCCTTACTCTGCAGCCACACACCGGTCATTTAGCTCCGCTCCCTTCTACAACTGCGGGGTTGTGGGCGGCAGCGAGGATGACGAAGAAGATGAAGACCTGCAGATGGCTTTGGCATGCAGCCTGTCAGAAATGGAAGcccagcagagagcagctgctACTGACTTCATATCAGGTGCTGGGGGTGGGGGCAGAGCCATGATTGACAAAACTGGTGGTCATAAAGGAGGCAGGGTTGTTAAGACTACACATTTGAATGTGGCTATTAGTAAAAAGGTTGTTGCaggggagagagatgaagaggggCAGTTTAAAATGGGCTCTGGGCCTGGAGCTCGGTGGGAAACGGAGAGAAATGGAACCAGGGAACCAGACTTCTCTCCTGAGTCATCCACAACTGCCAGCACTACGCCGCTAAGCCAAAGCACTGAAGAAGAGTTTGAACCTGCCATGAAAAATAGTGATGGCagtgtgaaaaagaaaaagaagtgtGGGTGTATTATGTGctgatgcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgtatgCGTGTATTTGGGATGCCTTATTTTTATACTTACCTCAGTGTTGCCTTCAGCCAGACTCTAATGTTATGTGATTGCCAGCCTCTTTCAGACAGTGCTTCAACTGATCACAAGGCTTTCATGCTGTCTTAACACCTCTAAAAGAGACAGTGAGTCAACCTTGGCAGGGTGTCAACCTAGAGACATAATTTGCCAATACAGCTACAAGatcaaataaaatgtgaagCAATACAGAGGattgtttctgaatgtatgTAAATAAACCAAAAAGAATGGGATTAGGAGGGTTTTAGATGTGGCCAAGTTGGTAGTGATTTAAATCCCAGTAAGGGCAGAGTATTTGTGTCCGTGTGTTTGGGTCAGTTGAGAAGTTTCTCATTCTGGTTCTCTGGCAAAGGGAATGTATCAGAACTGTGTCACATGCCCAGTCTGAAACAATAGATACACATCTAATGCAGGCCACAGAACttacataaaaacacactgaCTTCCCAGTCAGAATTGTTCAAACCAGTAGCTCAGCTTCTACACTGTTGCAAAGTTGCAATAGTCAGGGGCGACACTTTTACATCACTTTATGAAGTTGTAAGTCAAAGCACAGTGTACAATGTGTACAGCATTATGACTGATTGTAAACCACAGTTACAAATAATcattatatacatttttcatGTGTCCTCCTTTTGGTGCCTTTGCACATTTTTACTACTTTACTCTGTGTTTACCTTGATTACATTACCACTGCAAATGTgccaagtacaaaaaaaaactaaagcaaAGCAAATGTTAAAGCTATACATTAGTAATTGGGAATGATGTCAGGTATTCTGAGGAGTGAGAGTTGTCAAATTCAACTGCATTATTATAGTTGTGCgaatgtttaaaaatatgaaGCTGAGCTTCATCACCAAATCAATACTAAGTTTGATTTCCCTGTGAACTGTCAGGCCAGGGGGGGTGCTGTAGCTGCCTTTCCCTTCTATCAACATCTGTTGATTAAGTGTAACCTGAAGCCAGACACTTAACCCCACCTTCTCCAGTTTAGCTGCTTAATGCGCAGAATTACACAGACGTTGAGTGCTGAAAAAAAATTGCATTCATCGTTAAAATAAGAATTTTTAATCTGCCAATAATGAAGAGCATAACTTGAGATTAGTTAAGAATAAATCTATATAGTCTGTGTTTTGGTTTCAAATTGTGATGTTATATTTTGGTCTTATtgaaaccacaacaatatacgcgttatacacacacacacacacacacacacacacacagtcatagtTGAATACTAATATAACAGTTTTAAATGTGACTGTTGCTGTATCTGTGAAAAGGCTAAAAGCAACAGAAATTCCTGTTGGTGTCAAAACACAAAGGTGTTAAAAGTAATTACTAGTACCAATAATatgttaaaataatatttttacaaaCCTGTCTCAATAAGTACCTTATTACAGACAGTGTTCCTTTCCCTGTCCCGCTTTCACACTGCTCGTAGAGCACAATACGTTTGTTTGGTTGTCATATATTTTTCACAAGTGCCTGATTTATTTAGCATtgcatgacttttactttgaCTTTAAAGGATAACTATCATCACTGTCAACAAGTACAGCTGTGAGAACACATCATCAGTTTCAAAATTCAAATAATCGTTTTCTCTGAGTTGTTTAGGATTTCTCCTCTCCAACTACGTTATTGCGTGTGGAGAGGGAATGAGGAAGAGGCAGatgtttgtctttttaaaatatatatccaCCTGTTTTATTTGTATGACATTGAAATgccatgtgttttttgttttttttcagattgtTAAAAGGGAAATAACAAATAAAGATTGAGCCGAAGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641043.1 lncRNA upstream 207763 14414287 ~ 14415137 (+) True LOC120570330
TU166423 lncRNA upstream 209277 14413388 ~ 14413623 (+) True G123765
TU166417 lncRNA upstream 238549 14384119 ~ 14384351 (+) True G123759
TU166386 lncRNA upstream 460258 14161682 ~ 14162642 (+) True G123731
TU166380 lncRNA upstream 726772 13894280 ~ 13896128 (+) True G123725
TU166540 lncRNA downstream 39941 14673136 ~ 14673339 (+) True G123848
TU166547 lncRNA downstream 86933 14720128 ~ 14720815 (+) True G123855
TU166551 lncRNA downstream 121333 14754528 ~ 14754749 (+) True G123859
TU166629 lncRNA downstream 302001 14935196 ~ 14935409 (+) True G123907
TU166637 lncRNA downstream 317889 14951084 ~ 14955541 (+) True G123911
XM_039817683.1 mRNA upstream 1437 14617708 ~ 14621463 (+) True LOC120569679
XM_039818900.1 mRNA upstream 6653 14614357 ~ 14616247 (+) True LOC120570509
XM_039817647.1 mRNA upstream 134753 14460890 ~ 14488147 (+) True vwc2l
XM_039818877.1 mRNA downstream 30594 14663789 ~ 14672147 (+) True desma
XM_039818878.1 mRNA downstream 30594 14663789 ~ 14672147 (+) False desma
XM_039818856.1 mRNA downstream 79390 14712585 ~ 14727378 (+) True LOC120570476
XM_039818859.1 mRNA downstream 79391 14712586 ~ 14727378 (+) False LOC120570476
XM_039818857.1 mRNA downstream 79391 14712586 ~ 14727378 (+) False LOC120570476
TU166397 other upstream 388830 14233332 ~ 14234070 (+) True G123742
TU166312 other upstream 945554 13635586 ~ 13677346 (+) False cps1
TU166270 other upstream 1268815 13353306 ~ 13354085 (+) True G123633
TU166170 other upstream 1343034 13049758 ~ 13279866 (+) True G123539
TU165581 other upstream 4004204 10607484 ~ 10618696 (+) False lrp1bb
XR_005640926.1 other downstream 505282 15138477 ~ 15155886 (+) False trpm2
TU167128 other downstream 1466076 16099271 ~ 16101611 (+) False dap1b
TU167490 other downstream 2364586 16997781 ~ 16999532 (+) False col28a2a
XR_005641003.1 other downstream 2494686 17127881 ~ 17177640 (+) False myo3b
XR_005640989.1 other downstream 3226965 17860160 ~ 17880726 (+) False hoxd10a

Expression Profile