RNA id: XM_039817707.1


Basic Information

Item Value
RNA id XM_039817707.1
length 3906
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC120569695
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19357001 ~ 19365424 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACATGGTTTGTGTAGTTCGTTCTAAAGTCAAAACACTTTTAGACATGGAGAGGTGTCGATCTTTGAGAATGCCGATAGAGTGCATTACCTGCCTGTAGCATCACATAATGTCACTTCACATTATTTCAGACATGCTGTAACAGAAGTGAGACTGACTTGGTCACTGACCAGACTGACTAGGCTTGGTCACAACTGCTATGGTGTGAACACTGTTATCTGAGGCAGATTTAGGATGAAGTGTTCCCTGCGATCTTGTTTGAGGACCAATTTGCTCTTTTGCCTGGGACTACTTCTGCACTGTGGAGAAGCCCGAGTGCTCACTGAAGTACAGGCTGGGCCACTGTATCGCGTGGTGGGCTCTCCGCTCTTTATCTCCTGCAATGTGAGTGGCTTTGCCAGTGCCAGCACTAGAAAAGGATTTGAATTCCGTGTTAAGAAGCCTGAAAAGCCAACATCTGAGATTAACATCATCAGCACCAATGACCCAGACTTCAGCTATGCCGTGTATACACAACGTGTGAGGAGCGGGGACATTCATTTGACACGTGTGAATCCAAACTCAGTCTTCTTTGAGATACAAAGACTAGATAAAACTGATGAAGGGGAGTATGACTGTAGTGTAATCAACCACCAACATGTTTATGATGGAACCTACAGCGCTGCGACAACAGTGAAGGTGATTGACAACTCCCTCAGTGTTTCATCACCTGCCTCCACTTCACTGAGCTATTATGAGGGTGATGCTCTCGCTTTAACATGCCAAGCCTCCAGCAACACCATCCAGCACACCCATCTGTCTCTTGCCTGGTATCTCCATAAAAACGGTGAGGAAAACGCTCAGCCTATCATTTCTCTGGATAGAGATTTCACACTGATCCCAGGCCCGGGGTTTGAAGGGCGTTACCAAGCTGGACTCATAAGGTTAGATAAAATGGGAGAAGCCATGTACAAGCTAAACATGGCTCAGCTGGAGCTGTCAGACCAAGGCAGGATCTACTGCCAGGCACAGGAGTGGATCCAAGATCCTGACCGCTCCTGGTACACCATCGCACAGAAGGATGCAGAGGAAACTATCGTGAATGTCAAAGCCAGAGATGTGGTGCCAGACACATCGTCTCTGGTGGTGAGAATCTCTGCACAGTCATCAACACTGCAGGAGGGGCAGGAGCTGTCGCTGTCCTGCAACGTAGACACCCAGAACCTTCAGGAAAGGTTCTTCTCTGTAGCCTGGCTCAGGGGAGGTGTTGAGTTGGCCCGCATTGGCCCTACAGGCATTCTGTCTGTGGGGCCTGAGTACAGTGGGCGATTTAAAGAAGGAGAGCTGCGGGCAGCACGGATTGGGGACCGAGATTACCGTCTCATATTGCAGCCTGTCAGAACCGAGGATCAAGGAGAGTTCACCTGTAGAGCATGGCTTCAGGACAGAGGGCAGGATGGTGCCTTTACACAGGCAGCATCCCAGGACTCCAAGTCCCAGCTGGTCAGCATCTCAGCCACAGAAAGCGGGCTCTCAGTTGAAATGCTCGAAAACTCTGCGGATGTTAAAGAAGGTGAAGGACTGAAGCTCACCTGTAAAGTGCGTGGGGTCAAAGGCCCGCTCTCCGTCACCTGGCAACGCAAATCAACATCAACGGCCATGTTCACCAGTGTCATCAGTCTAAGTCAGGAGGGTGTTCTGGAGAAAGCGGAGGAGTTCATGAGTCGCAAAGTAAAGGCAACACGTCCAGCGACTGACACATTCACCTTAGAGCTTGATGAGGTCACTCCTTCTGATTCAGGTGTTTACCAGTGTGCTGTGTCTGAATGGAAAATCAATAGCAAGACCAACAGCCAGTCACAGACTGCCACTGTGATAGTGGCTCCAACAGATTCGTATGTAAAAGTGTCTCTGATAAGTCGCAACAATGTAGCGACTGTGGGAGAAAATGTGGAGTTGATGTGCCGGATCAGAGGGCTACGAATGCCAATAACACTGACTTGGAGCCTGCAGCGTGATGCCTCAACCCTAGATAACATCCTTACACTGTACTCTAATGGTGACATCAGCTGGTTCGGAAACCAGCAGCGCTACCAGCTGAAAGTAGAGAACACACAGAATGAAGTCATTCACTATCTGCTCATTAACAGTGCGAGCCACAGGGAGGCAGGACGCTaccagtgtagtgtgtctgtcttCCTGGAGAATGTACACAAGAAGCTGCCTCCATCCAACCTGCTTGCTGTTTTGGTCAATAACCCAGAGAGCAAACTCCATCTGACCACCACCCCTGCCTTGACAGGAAATATTAACACTGATATAGACATGAATTGCTTAGTTATCTCAGACTCCTCTGCATCCTCTCGCTATGCTATCACCTGGCTGCTCCACCAACAGACAGAAAATAAGACCATTGTGAGCTCGGACAAGGATGCCCTAGTAACTTTCGGATCCCAGGTACAGCAGAGCGACAGACAGCGAATCAGCATGAGGCGCACTAAGGGGCCCAGTTTTGAGTTCAGTATTCGTCAAGCTCGGGTCTCAGACAATGGCTTATACGTATGTAAGGTGGTGGAGTGGCTGCAAGATCCTCATGGTGACTGGTATCAGCTCTCACCAGTGTCCAAAACTACAGAGTTAACAGTTATTGAGCCTGCCAATGACCTTAGTTTAGACAAGAAAGAGCAGCCGTTGACTGTCAAGGAGGGAGATGAGGTGGAGCTCAAGTGTAACATCATCTCAGGTGCATCTAGTTCTTTTTTCTACAAAGTCACTTGGCTCTACAGTGGACATGATTCTTCCGCCACAAATGCCCTGGTGCAGCTTGACCACACCGGCCTGCTGAGTTATCCAGAGAACCAGGAGCTCAGAGGCCTGCAGGGGCGGCTTCGTCTTTTCAGACCCACTCAGAGCAGCTTCTATCTGGGTATTCAGAGGGTGCATGAGGGTGATAGTGGGACCTACCAGTGCCAGGTGGAACAATTCCAGCTGGATCATGAAGGTCAATGGCAACAAAAGGCCTCAGACAGCGCTGGACGAATCGTGCTGACTGTTAATGTTGCAGAAAAAAACCTGTCCATTTTGAAGGAAATGAAGGAGTTGAATGTGAGCAGATCTGAGGATTTCACTATCCCCTGTCATATCACCAAACAATCCAGCAGTGAATCCGAGTTCCAAGTCACATGGCTTTGgcagaaagacacagagacgGAACAGCACCCCATATTCACCTCTTACCGCAACTCCACCCTACAAGACAGATTTAGGAATGGTGATCAGCTAAGATTTGGCCACCCTTTGCCCAACCAATTCAGCCTGACAGTCTTGAAGCCAAGTCCTGTAGACAGTGGCCTGTATTTCTGTGAGGTAGAAGAGTGGCTTCCATCTCTGTCTCGTGGATGGAGGAAGGTTGCAGTGGAAATGTCAGGATATTTGACTGTTAATGTCTATGCAGATGGAGATGTTAATGCCGTCTCTGAGCCAGAATGCGAGTCGGGTATCTGGATGGGGATTCTCATAGCTACTGTCATCTGCTCACTATTGGTCATATTACTACTGGTGCTGAAGATGTGCAGGAGCAAAGTTACAAGAGGAAAGCAGTCAGGCCAAAGTCTCTGGACAGAGGAACTCCCTCTGAACACCAAACCCAGTGTAGAGGACTAAATCGGACCAGAAGTGGAGAAGAGGTTTTTATGTTACATGTAATATATGCAAAGTTTTATAATTCACACTGTTctactgtacatattttgtattcatttttattcGAAGTTCAATCATTCTTGTTTAAATAAATCTGTTGATAATTTTCCATAAAAAAAgtagtttaaatgttttactcTGTGCAGCTGGGAATAATTTTGCTTATGAATTAATGAAATTcattaaaacattcatttttaaataaaatgaaaaatgcatttttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168369 lncRNA upstream 266216 19089450 ~ 19090785 (+) False tmsb4x
TU168280 lncRNA upstream 501971 18852566 ~ 18855030 (+) True G125115
TU168279 lncRNA upstream 505206 18845407 ~ 18851795 (+) True G125114
TU168275 lncRNA upstream 527093 18829619 ~ 18829908 (+) True G125110
TU168274 lncRNA upstream 527475 18828933 ~ 18829526 (+) True G125109
TU168492 lncRNA downstream 90673 19456097 ~ 19459225 (+) False igsf3
TU168499 lncRNA downstream 102008 19467432 ~ 19468790 (+) True G125266
TU168502 lncRNA downstream 126114 19491538 ~ 19586655 (+) True G125267
TU168513 lncRNA downstream 185934 19551358 ~ 19551941 (+) True G125274
TU168638 lncRNA downstream 382642 19748066 ~ 19752627 (+) True G125369
XM_039819025.1 mRNA upstream 44934 19272248 ~ 19312067 (+) True LOC120570608
XM_039819107.1 mRNA upstream 125109 19224122 ~ 19231892 (+) True gpr143
XM_039819102.1 mRNA upstream 145170 19195968 ~ 19211831 (+) True mospd2
XM_039819159.1 mRNA upstream 170993 19173950 ~ 19186008 (+) False glra2
XM_039817708.1 mRNA downstream 22591 19388015 ~ 19459274 (+) True igsf3
XM_039818483.1 mRNA downstream 152555 19517979 ~ 19521172 (+) True LOC120570242
XM_039818876.1 mRNA downstream 159326 19524750 ~ 19549653 (+) True LOC120570493
XM_039817991.1 mRNA downstream 218695 19584119 ~ 19605190 (+) True dop1b
XM_039817992.1 mRNA downstream 219746 19585170 ~ 19605190 (+) False dop1b
TU168229 other upstream 652473 18703028 ~ 18704528 (+) True G125079
XR_005640963.1 other upstream 1339588 18010757 ~ 18017413 (+) False hnrnpa3
XR_005640989.1 other upstream 1476275 17860160 ~ 17880726 (+) False hoxd10a
XR_005640959.1 other downstream 809404 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other downstream 809404 20174828 ~ 20265148 (+) False myo16
TU168970 other downstream 1126754 20492178 ~ 20521274 (+) False G125627
TU169140 other downstream 1487665 20853089 ~ 20858910 (+) True mpc2b
TU169142 other downstream 1494728 20860152 ~ 20865442 (+) True G125757

Expression Profile