RNA id: XM_039817722.1


Basic Information

Item Value
RNA id XM_039817722.1
length 2009
RNA type mRNA
GC content 0.41
exon number 14
gene id LOC120569703
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 15207486 ~ 15211365 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTTGAAACGTCTGAACCGTTGACAACAGCAGCAGGCAGCAGTAACCCGCCACAGTTGAcaagcagctagctagctagctaatgccGCTAACGTAGACTGGTCTAAAAATGAACGACCAATATTCTCTTAACGTTAATAATATTGACAGCCTTCTCTTTCAGTTTGCTCTTCAAACTCGGGAGCTTTCCCAAAAGAAGAATGACATCAACCAACAAATTAAAGTTTGTAGAGCTGATACTGCTGAGAGGAGGTCTTACATTGAAACAATCCACAGAGATATCAAGAAACTTGAGGAAGAAATAAGGGTGAAGCAGAGCACTGTGATACATAATAAAGCAAATGCTAGAAGCATGAAGGCGACTAACAGCCTGCTTCTTCAGTATGAGCAGACACTGAAAGCAGAACTGGAGAGCAGAAAAGCCAGCTACAACCATGACATGGAAGTCTATGAAGAGAGAATTGCAAGCTACAGGAAGACATTCCAGTTGCATAAAGAATATTATTACCAAAATACTCTTGCTCAAAAGCTCCTCGTGCTCCAGGCTGAAAAAGAGGAGATTGAGTGTAGGATCAAGACTTGTGATGAGCAAATAACAATGAAACTGAAGGAGCTGGACCATCTCGCTGGTCCAGCAGTCGATTCTTCTCCCGATGAGAAACTACCAGACAGTGTTTCTGGCCAGCAGCATATAGCAGAACCAGAGAAACAATTAGATTCTCAGACAGAGGAGGAAAGTAATTTTTCCATTGACATCTCTTCTCTTCATCTTAACCAGACAAAGAATGGTCATAGAACTTTTGTAGAGGCAAATGCTGAAGAAATTCATGAGGAAAACATGGTCCAGCATACTACCGCCTGCAGCCCTTCCCCAGAAGAAGAAAGCAATGAGCTGTGGTCATGTCATCCGTTGGATGAGGAAACACAGCCAGATGAGATGCACACTGAGGAGCAGGAAACTGGACAAGAGGACCAAGTCTTGCAGTCCAATGTATCAGTTATGGAGGAAGCAGAGGAGGACGAGGTGGAGGAGAAGGTAGTTATAGATGAAGAGCAGACACCAAGCGAAGAGGACAATGAGGGAGTCACTGCTTTTACTCACTCATCATCTCAAGAAACGATTCCTCAGTCATCCCCGGCAGAAATGACAGCTGTGCCTTCAACCCCATCATTCCCATTTAACTTTAGCCATGCCAGCTCCCCACATCAAGGCACCTCTGATACCAAATCTCCAGCTTTCCTGTTCTCTCTGAACTCTGATCCTAGCACCTCGGGCTTCTCTGGGTTTGGATTTGACGTGTGCTCGTCACAGGATGAGGAGTCATCTTTCACTTTTACTGGCCCTTTTTTCAACGAGAAGAAAACCACAGAATCAAAGTCATCAGCCTGTCCAGAGTTCTTGTTTGGCCAACCAGAGCAAATTGAAGACTTCCAGTTTGCCTTTACCCCCAAGAGCCCTCAGACAACTAACAAAGATACCACCAGGGATGATTTTCCATTTTCATTCAACTTTTAAGAGTTTGAAGAAAAACATCTGAAATGCTGAATTATTTGTTTGAAAATTGTGTTTGTAAGACCAGTTTGACCAGTCTTATTTTCTTCATTAATGTTCTCATATAGTGGGCAATGAGAAATACCTTCGCTAAGCGTTCGTGGTTTAACACTATAATACAACTTAGTTTGCCATGTAggattttgtttctttgttctgtttgttatttatttctgtctgtTTAACTTAATATGTTAATTTAAAAGCTATTTACACTACAAAGAACACATTTCTAACATTACCACAGTTGAGTGACTTTTTATTGAAGATATAGCATTATTATCAAAATAATACACACGTTTATATTTCTTTACAGATTTCTCTTTTGTACGTATAGTagttttgaagtttattccaCTGCATATTTTGTGTATTGCTGTTCAGTTTGCATTCATTAAAGACAGGAGTGTTTCAGTCCTACACAGTGTATAAATAAAAGGAACTAGTTATCACACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166795 lncRNA downstream 11268 15178318 ~ 15196218 (-) True G124014
TU166770 lncRNA downstream 83541 15116194 ~ 15123945 (-) True G124001
TU166768 lncRNA downstream 84032 15115730 ~ 15123454 (-) True G124000
TU166696 lncRNA downstream 223071 14984014 ~ 14984415 (-) True G123959
TU166677 lncRNA downstream 267912 14939331 ~ 14939574 (-) True G123948
TU166949 lncRNA upstream 263893 15475258 ~ 15476148 (-) True G124136
TU166959 lncRNA upstream 291383 15502748 ~ 15504712 (-) True G124146
XR_005640868.1 lncRNA upstream 653167 15864532 ~ 15901689 (-) True LOC120569338
XR_005640867.1 lncRNA upstream 653711 15865076 ~ 15901689 (-) False LOC120569338
TU167049 lncRNA upstream 673535 15884900 ~ 15901689 (-) False LOC120569338
XM_039817585.1 mRNA downstream 122057 15080444 ~ 15085429 (-) False LOC120569627
XM_039817584.1 mRNA downstream 122057 15080444 ~ 15085429 (-) True LOC120569627
XM_039818098.1 mRNA downstream 129084 15006261 ~ 15078402 (-) False dip2a
XM_039818093.1 mRNA downstream 129086 14996489 ~ 15078400 (-) False dip2a
XM_039817726.1 mRNA upstream 12595 15223960 ~ 15236351 (-) True LOC120569706
XM_039818914.1 mRNA upstream 40265 15251630 ~ 15262614 (-) True marchf4
XM_039818522.1 mRNA upstream 65561 15276926 ~ 15285695 (-) False nme9
XM_039818521.1 mRNA upstream 65561 15276926 ~ 15285695 (-) False nme9
XM_039818523.1 mRNA upstream 65561 15276926 ~ 15285695 (-) True nme9
TU166697 other downstream 213697 14984485 ~ 14993789 (-) True G123960
TU166598 other downstream 412989 14784561 ~ 14794497 (-) True G123886
TU166600 other downstream 417580 14784561 ~ 14789906 (-) False G123886
TU166096 other downstream 2587671 12619353 ~ 12619815 (-) True G123481
TU165255 other downstream 6207363 8999462 ~ 9000123 (-) True G122878
unassigned_transcript_607 other upstream 205835 15417200 ~ 15417272 (-) True trnak-uuu_17
TU167157 other upstream 887913 16099278 ~ 16101593 (-) True G124303
TU167228 other upstream 1167244 16378609 ~ 16380765 (-) False gcgb
TU168094 other upstream 2901745 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 2902145 18113510 ~ 18115089 (-) False LOC120569287

Expression Profile