RNA id: XM_039817832.1


Basic Information

Item Value
RNA id XM_039817832.1
length 7539
RNA type mRNA
GC content 0.49
exon number 41
gene id LOC120569768
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 11949114 ~ 11980836 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGCAACAGGTGTGGCACCGCCGCAGTGTTTGTCCCTGCCCGGCTGCCATCGGAGAGGTGGCTCCCATCAACAACACAGAACTGTCAGACAACTTCTGCTTTCAGTGCGTAGCACTGATTGGAATAAAAAATGCCATAGCTCAGTGTTTTCTGCTGTGACAGCAACACACAGTTATCCGGACTCATTCAAACATCTCCGCGACTTTCTCACGAGTTAAAAGCTGGCAGTTGGTAAGTTtagttagttaacgttagcttctgTAGCAGCGCTAGCATTAAGCTAACCAACTATCGGTGTACTAGCTTTACCTcacttattttaataataaactaccttcatgttttatttaaggGGGAGTTAATTTCGCTATATGTTAAATACTGACGAATGTATACTTAGCAAGATATGACAATCGTCTCTATTTTCACTCGGTGACAGAACATGTCTGTTGttaattagctaacgttaacgttaatctcCGTGTAAATTGATAGGTAACTTTATGTTAACCCTAGAGTAGTTACGAGTTCTGTGttgatgtgatgtgtgtttcCAATGATACGGGGTAATATATGGCTTTTAATGTAAAGCACGTAAGAAGCATGGAGCAACAATAACAAATAGTTTTACTGGGTAAGGAGTTGTTGTGACTTGTCAGCAGAATCCAGTAAAGATCAAAAGATACCACTCCTCTGCTCCCCGTGGAACCATTACAAACTAGCCTGCTCATGACTGAAATCAATATCACACAAGTTCACTCTTGAATCAACGTTAGTAGTTtgacaaaaaataatcttgagtCAAGGTCTCTGAGCAAACTGATGAAGACTGTAAGATGCATTTCAAAACCTCTGAAAAAGATATAGTGTTTTAGAAAGAACAAGCACTTGAAGCCAGATGAATCAAAGAGGTGTCAAAACGGTACAGAAGATTATTCGTGCTCATGTAAACTGGTTTATTGTTAAGAGTGAACGAAAGTCAAGAGCTTTGGAAAAATGTTAATAAAGATGCCTTCACTGTCCTGTGGAATGGAGAGTCTGAAGTGATGGAGAACAGAGATgagagCCCTGCAGATGAGCCGGCCCCCACACCTCCAGAGCAAGGACTGTTCCACATCTGGCAGTCAGCGGGCCCCAGTGCGCAACTCTGTCCAGAGAGAGTGCTCCTGTCCAGGCCTGTCCTGCAGGCCACTCTGGGAGAAAACCATGGACTCCTGCTGACACAggGTGGACAGGTGTATTCTTTCGGAGAGCTGTTGTGGAGGGATCTGAGCATCCCGGTGTCTGCTCCGGTGCTGGAGGTCTCTCTGCTGGGGAAGACGGTGGTCCGTGTGGCTGCTGGTGGTTTCCACTGCGGTGCGCTGAGCGAGCAGGGCAATGTCTACATGTGGGGGGAGAACACTGCAGGACAATGTGGGCAGACCGAGAGGGGCACAATCACAAACATCACAGTTCCAGAGCCTTGCCCGGTCACAGTGGTGGACAGTGAGGTTGTTCCTCCAGCAGTGGTTCGGGTGGTGGATCTGGCTCTTGGACGGGAGCACAGCTTGGCTTTGTCGGCCCGCAACGAGGTGTGGGCGTGGGGCAGCGGCTGCCAGCTTGGCTTGGTCACCAACACCTTCCCTGTTTGGAGACCACAGAAGGTGGAGCACTTGGCAGGCAGACATGTCATTCAGGTGGCTTGTGGTGCCTACCACAGCCTGGCCCTGGTTCGCAGTTTAACTCCACAGAATAGCCAGAATCTCACTGAGAAGAGGGAGCGGGGTCAGTCGCCTCACTATTCAGTGACAGAAAGGGAAGAGTTGTTTGCAGTTGATGCTGGTCACTACTGTCCCCTGGGGGTGGAGCTGAATGAAGTCATGACCGGCGAGACCTCTCCCAGAACAAGAGGCCCCAGACGAAAGTTCCAATCTCGGGGAAGGTCAGCTGGAAGCAGCCCTGGCTCTGCAGCCGGTTCTTGTCCATtttctgaaaatggcaaatCTAACACTAAACAGACTAATCTTTCAGTTGGGCACACTCACCCTCTCACTGACACAGATGGCAGCCCCAAGTCTCATCCCCTATCAGGCTGGGAAGCCAATAAGAACTCCACTTTTCCTGACGAGATGGAGCTTCAGAACCTCCTTCAGAAACTCTCTACTCACTCATTCGAGATGCGCCACACCACCGGGCCGGGAGATACCGACTCACTGAGCAGTTACACTTCAGATGACAGCTGTGTTTCCTCGACTCCTTCCACGGATCTGTTGACTTCCAGTTACAAAGAAGACTCGCCAATCAAGAGTCAAAACAACAATGGAGTGGCCGTGCCGTACTCCTCCTCCCCAGTGTGTTTGGAAGAAGTTCGGCTTTGTCTGGAGGCAGAGAAGCAGACACTGCAGGGGCAGAAAAGCTCCAGTCTCACAAATATAAACCAGAAGGGCAGAGCAGCAACAAACAGGAGACGCTCCCTGCCTGGAATACCCACCCGTGgGTCTCCACGACAACTGCGGTCTTGTGCCTGCAGGCCATCCTCTGTTGGTTGGTCCCAGGTCGCTGCAGCGGAGGAGGCTGGAGACGGGCTGCCGTCTTTGGAGACAGAAGTGTGGAGCTGGGGCCGCGGGTCTGAGGGGCAACTGGGCCACGGAGATCAGCTCGCTAGactcCAGCCTCTGTGTATCAAGTCTTTGACAGGGGAGGAGGTAATCAAAGTCGCCACAGGGTCACACCATTCACTGGCTCTCACTGCTCACTGCCAGGTGTACTCGTGGGGCAGCAACATGTGTGGACAGCTCGGTCATGTCAACAGTCCTGTCACTGTACCTCAACAGGCAAAGCTGTCTGACGGTCTTCGGGTTTGGGACGTGTCAGCCGGTCAGAGCCACTCCCTCCTCCTGGCTGATGGAGACTGTGTCCAGCCGGTCCTGTTGTACTGCGGCCAGCAGCATGAGCCAACGTCAGCGCCGAGTCCGAGGTCCCACCAGAGTCAAAGTTCATGTCAGAGGTCCCCCAACAGAGCGGAGAGTTATACAGTCAGACCCACCCTGCTGCCCTTCTGCATGGAGATGGGTTACATCAGCACTGTGTGCAGTGGCGGTCAGAGCTGTGCGGTGCTGGCAGACCAGAACGTCATGGGTTTTATCTCAGCTATCCATGAGCTGGCctccagagagagacagttCTACTGCTGGTCAAGCACCGTCACGGAGCGCCTCCTCACACCGCTACGCAACAGAGagagtgtgtgtccGTCGTTAGGTGAGCCATGCACtcatctcttcttctctctctgtgagaGTTTTGTTCGTCTGAGCCTCCTGATCGGTCGACACTCCACGTCACTCAGCTACTTCCTGCATGATGTGCAGGGCTGTGATGTCACTTCCCTTCCCCTGCTGACACATGCTGAGCACTTTCTGGACATCTATAAAGAGTATTGTTCTTCACTAGGTGACTTCCACGTGATGGGCGGATTCCGATCACTCCATAAACTCTCACTTGAGTGTTTAGGCTCTCAGCAGACCATGCTCGCTCAGCTGTGTGTATCGGACCAGTCTGTCAGTGGTGATGTTGATCTGGTTTCCTTGTTGTACTGGCCTCTGCAGCAACTCCACCAGTATAGCCGAGTCCTGCTCAAACTGGCAGCCTGTTACGATGTGTTAACTACAGAGTATCAGTCCCTCCATCAGGGCTGTGGTCAGTATGACTCCCTGTCTTTGTCCCTgttgaggaagaagaaggaggctGAAACCACCTTCCTCTTCTGGAAGACCCACTCTGGAAAAACTACTGAGGTCCTGCGTCTCCCACAGCGTCGTGTGGTGTGTGAAAGCAGCAACAGATCTCTGACTCTCCAGAATGCCGGGCGGTTCTCCAACCACTGGTTCATATTATTCAATGACACACTGGtgcacacacagGCTGCCATTCCCTCTCAGAACCTTttcTCCACACATCACGTCTACCCTCTGACCGGTCTGTGGGCAAAACCACTTACTGAAGACAGCAGCGGACTCTATGCCATCAAAATTACATGTCCAGAGGAGAGTTTCACCCTGGTGGCTTCGACACCACAAGAAAAGAACAAGTGGCTACGGTCTATTAACCAGGCGGTGGATCAGGTGCTGGGTGGTGCAAGTCAGGGGTCTTCCCCAGGGATGACAGCAATGTCTCGCACTGCCTCATACACGTTCACCGGAGAGGGCCGGTTTAAAGACGGCCAATACACCGGGAGCTGGCTGGCAGGACGAGTTcatggcagAGGCACCATGAAGTGGCCAGATGGACGGACCTACAGCGGGAACTTTAAGAAAGGACAGGAGGATGGCTATGGAGAGTGTATAATACCTAACAAAGTGCTAAAGAAGCCAGACAGCTACCAAGGATACTGGAGAGATGGCAAGATCCATGGTTTCGGCAAGTACAAGTATGCCAATGGTGAGGTGTACGAGGGCTGTTTCTGTGATGGGCAGCGGCACGGTTATGGCATGCTGAGCTCCGGGAGGCTGACCAAGAACTCCTCCAGTGTTTTCATTGGCCAGTGGGTCCACGACAGGAAGACGGGATATGGAGTCTACGATGACATCACCAGAGGTGAGAAGTACATGGGACAGTGGTTGGAAGAGCAGCGGCATGGCAGCGCTGTGGTCGTCACCCAGTGTGGTGTGTACTTTGAAGGGACCTTCAGAGACAACAAGATGTGTGGTCCAGGTCTGTTGATGTCAGATGATGACACCGTTTTACATGGGGAGTTTTCTGATGACTGGACTGTCAACGGGAAGGGTGTTTTATCCCAGGCTAATGGTGACTGCCTGCAGGGCATGTTCAGTGGAGAGTGGACCACAGGGCTGAAGGTGGTTGGAACTTACACCAAACCAGCTGCAGATGAACCagaaaacaaagagagaaacagCCTGCTGCTGGGTCAGTACATGGTGCCTGCAGGTCAGAGATGGCTCTGTGTGTTTGATGAATGTTGGAGTCGACTGGGCTGTGATGCTcctgggagaggagagaggactgtgGCCTGGGACAACATCGCTGTTACCATAACAACTGCACGACGTCAAAGcccagATCTCAGTAGGTCTCAGCGTAAAGTATTGGAGTGTTTGGAGATCATTCCTCAGCACGGAGAACCGGTGACCACCGCAAACTATGACAACATACGAAGATACCTCATCAAGgcgtGTGAGACCCCTCATCACCCTCTGGGCTGGCTGGTGGAGACGTTGGTGACAGCCTACAGGATGACTTACGTCGGTGTGGGATCCAACCGCAGGCTGCTCAGCCATGCCGTCCAGGAGCTTCTGGCTTACCTTACACATTTCTACAGCATTATCAGGTTTCTGTTTTCGGGGTTACCAGATGATGGCGGCATCATCCCAGACCCCCCTGCCTCTCCATCTCAAAGCGGACACAACTCTAACATAGCAGAGCAATACAGTGTTGTGGTGGTGAGCTgctcctctctgctcctccCTCAGCTGCTTCCTCGACTCTACCCTCCTCTCTTTACCCTGTACTGCCTGCAAGAGGAGCAGAAGGAGACCCAGTACTGGGAGCGCATCCTCCGACTCAACAAACAGCCCGACAAGTCACTGCTCAGCTTCCTGGGAGTGCAGGAGAAGTTCTGGCCTGTGTGGATGTCAATTCTGGGAGAGAAAAAGCAGATTGTGTCCAGCAGTAAAGATGCCTGCTTTGTTTCTGCTGTAGAGACACTCCAACAAATCAGCACCACCTTCACTCCGTCAGACAAACTCCTCGTCATCCAGAAGACATTTGAGGAACTGACCCAGGAAGTAAAACCTATGCTGAATAGCAACTTCCTGTGGTGCATGGATGACctgctccctctcttcctctatgTTGTGCTCAGGGCAAGGATCAGGAACCTGGGAGCTGAGGTCAGTCTGATAGAAGATTTAATGGATCCCAACGTTCAGCACGGAGAGATGGGACTGATGTTCACCACACTGAAGGCCTGCTACATCCAGATCCAGCATGAGTCGGCTTTGTAGGAGCAGAAAGCAAGATACCACACAGTCAACAAACAGCAATGCATGCACTGCCGGAAGAGGCACATGTGCTTAGCACATAGAAGCTGCCGGAACAAAAACGAGTCAACCCACCAGTATTCTACTGGATGCCACTGGGAAGCTGCACTCACAGTGTTACTCCTTCTGTCAAACGGAGAAATGATGTCTCTTACCTCGTTCACGGTTGATCTTTTCAGTATGTTACAGCACAccaaagttcttttttttctttttttaatggtaGACAGTTTTAATAGGGAAGTAACACATCACCCTCTTCTGGACAGGTTAGGAAACTGCATTATCGTCTTCATAACATTTGGGAAGATGTCGTTACATTAGATTTTCAGTAATACTCAGTTTCAACAATAACAATTTTGTTGAAAAGGTGTAACAACAGTGCAGttttcatttacagtattttttatttgacagtttttccCTAAAGGGTGATTCAAAAGAATATACAGTAAGGTCCCTGTGAGGTGTTGGACTGTATGTTACTCCAGACAAAGGGAACTTACTAACCACATCACTGATGAAGTCAGTGAACATAATGGGCTATTAACTGAAAATCGAAACaataatgtatatattgttttaaaggtCAGGCACTCTTCAAAGGGAACGTCAAGGTTTTAGAGTTGTGATTTTCCAcaagtttaatttaatttaacagtaAATCTCCAACCACAGTAAAATTCACTGTTACTTATCAAATATCAAAAGTGAATGAAACCTGCGGTGCGGGTACCTTACTGTATATGGTAGCTGCAGTTTATTTAACTTTGAGCAGTTGAGACAGCTACAGGAGACACAGATGGTGTTAATACAGCAGGGTCAGGGTCAGTCTGAAAAGCAGACTGGATGAAGGgttctgcttttttaacagaATACAACTCAAAAGTCGCATAGTTGAGTTTTTGTgtgaaaacagtgaaacagctTGAGGCACTTGATGTCTCAGCCGTGGTTTTGCTATTTCTTCCTCAGAAGCCAAACCAAAATCACCAGCTCAGAAACCTTAACTTCTCGTGTAACAGTATGTTCCTGCAAATGTAAATTAGATGCAAATCGTCTTCCTTCCTGTTTGCATATTTAAATCAAAAATGCTCCATTTCAGTAGCATCTCCTCTCACTTCCCAAACAAATGTAGTACCTTTTTGAATGCAAGGGAGGTGTACGTGACACTAAAGAGACTTTCAGTTTctttagattgttaaaataatttttagttTTTGAACACTTACGACATACTGTCCTGTAATACAAACCCAACCTGTGCGTGCTTCTGCATGTTGAAACTAACCATGAAGTAGTTTGTCTCAGGTCTGATATTCTCAACTAGTATACAATAAGCTGACCAGTAGGGCAGTAACCTGTCACTACAGAGGGAAAtgattttttactttacttaagATAAGTAATGAGGGAACACTGATTAGCTAAGCATTAAGGAAATGTTCATTCTCTTTGAGATATTTCAATTAGTTtgttataatgtgtgtgtagtggGGG

Function

GO: NA

KEGG:

id description
K04575 ALS2; amyotrophic lateral sclerosis 2 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165877 lncRNA upstream 101728 11847057 ~ 11847386 (+) True G123324
TU165876 lncRNA upstream 102165 11845673 ~ 11846949 (+) True G123323
TU165872 lncRNA upstream 103649 11843380 ~ 11845465 (+) True G123322
XR_005641050.1 lncRNA upstream 314322 11618607 ~ 11634792 (+) True LOC120570367
XR_005641051.1 lncRNA upstream 322580 11618596 ~ 11626534 (+) False LOC120570367
TU165953 lncRNA downstream 26837 12007673 ~ 12013200 (+) True serp2
TU165958 lncRNA downstream 33936 12014772 ~ 12016505 (+) True G123374
TU165968 lncRNA downstream 133211 12114047 ~ 12115217 (+) False G123384
TU165972 lncRNA downstream 133211 12114047 ~ 12213222 (+) True G123384
TU165974 lncRNA downstream 137545 12118381 ~ 12140323 (+) True G123386
XM_039817243.1 mRNA upstream 42289 11900708 ~ 11906825 (+) True LOC120569371
XM_039817244.1 mRNA upstream 42289 11900708 ~ 11906825 (+) False LOC120569371
XM_039818837.1 mRNA upstream 49940 11869237 ~ 11899174 (+) False agpat3
XM_039818840.1 mRNA upstream 49940 11870149 ~ 11899174 (+) False agpat3
XM_039818838.1 mRNA upstream 49940 11878050 ~ 11899174 (+) True agpat3
XM_039817233.1 mRNA downstream 26821 12007657 ~ 12012737 (+) False serp2
XM_039819133.1 mRNA downstream 79834 12060670 ~ 12113263 (+) True LOC120570655
XM_039817935.1 mRNA downstream 203630 12184466 ~ 12185606 (+) True tmem223
XM_039818745.1 mRNA downstream 272268 12253104 ~ 12261257 (+) True LOC120570413
XM_039818743.1 mRNA downstream 272585 12253421 ~ 12261257 (+) False LOC120570413
TU165581 other upstream 1330418 10607484 ~ 10618696 (+) False lrp1bb
TU165424 other upstream 2020223 9926817 ~ 9928891 (+) False umps
TU165423 other upstream 2024274 9920711 ~ 9924840 (+) False umps
TU165208 other upstream 3152368 8795453 ~ 8796746 (+) True G122846
TU164880 other upstream 4800075 7146625 ~ 7149039 (+) True G122588
TU166170 other downstream 1068922 13049758 ~ 13279866 (+) True G123539
TU166270 other downstream 1372470 13353306 ~ 13354085 (+) True G123633
TU166312 other downstream 1654750 13635586 ~ 13677346 (+) False cps1
TU166397 other downstream 2252496 14233332 ~ 14234070 (+) True G123742
XR_005640926.1 other downstream 3157641 15138477 ~ 15155886 (+) False trpm2

Expression Profile