RNA id: XM_039817847.1


Basic Information

Item Value
RNA id XM_039817847.1
length 5314
RNA type mRNA
GC content 0.39
exon number 9
gene id LOC120569776
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18442534 ~ 18459117 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTAAGCTGTCAAAAGCTTGTTGCTTAAATCTGTGCAGCGCTACAGTAAAGTAATGAAGCAACGAGGTCGAAATAACGAGCTATAATTCTACGAACAGAGCGATAATTAAATGATTTGTTAAACAGACATTTTGGGAGCACTTGCCATCTTGTTTTTGTTGACGTTAGTTCACTTGGACTGCAGTGTCGTCTGTCCTAGCTGGTGCGTGATTGCTGTTTCCTGAAGCGGTTCATCCTTGATAGTGAGaTCCCCAGCTTGAAGTTGGTCCGTCTACATTGCTGGTCTTTGCTTTTTTCAAGGCCAGACTCAATTAAGCACCCACACAGGATACCTCAGCTGCAAGTCCTCTGCTACCACTTTGCACAACGTCAGCACCTAAGCCATAATATAAGAGGACAGAGATAATGACCTGAGAATGAATGAGAATTAAATTCCCCTCACTTGTCTGATATTTATGGGCACCATCATTTGTGGAATATACTCTTGAATGTGTCACAGAAAAACATACATCTGCAGTTGTTTCTTTTTGATGGGTGATTTCTCAGTGATTGACCAGCCATCTGATCTTTCTGCTCCAGTTGATGGAGGACTCACCAAGTTGTTTTAAAAGAGGACTTTGCACATAGAGCCAACCTACAGCTTTTGGTGTATTAGGCACAATAAGATTAACTTAAAATAATTTATGATTATAACCTTTTGGACATGGCGTTGAACATGTCTTCAgtaagagacacaaaatggcTAACTCTGGAAGTCTGTCGACAGTTTCAGCGAGGAAACTGTTCACGTAGTGATGAGGAATGCAAATTTGCTCATCCACCGAAGAGCTGCCAAGTTGACAATGGGAGAGTTGTTGCCTGCTTTGACTCCCTGAAGGGCCGATGCTCGAGAGAAAACTGCAAGTATCTTCATCCACCTTCACACTTAAAAACCCAGTTGGAGATAAATGGGCGCAACAACCTCATCCAGCAAAAGACAGCAGCAGCTGTGCTTGCCCAACAGATGCAGCTCATGATGCCAGGACACAGCATGCAGCCTGTGCCAACATTTCATGTTACACAGGGACTGGGCTCAAATACTGGTCTTAGTTATGGTTCATACATGACACCTTTGAGCCATGGAATGAGCCTCATCCCAACGGACAACCTCTCCAGCACCCAGGTTCTTGTTTCTGGGAGCCCACCCGTCACAGTCCAgagctcctcctcttcttcttcttcttcttctccctcacAGAAGCTGCAGCGTTCGGACAAACTAGAGGTGTGCCGCGAGTTTCAGCGGGGAAACTGTGCAAGAGGGGAGACAGATTGCCGCTTTGCTCACCCCAGTGACAGCCCAATGATTGACACCACAGATAACACTGTCACTGTTTGCATGGACTACATCAAGAGCCGCTGCTCCAGGGAGAAGTGCAAGTATTTTCACCCGCCTGCGCAATTGCAGGCCAAAATCAAATCCAGTCAACAGCAAGTCAATCACACAGCCGTCGCAGCCCAGGCTGCAGCCATGGGCTATCCCTACAGTGTACCCCTACCAAAGAGACCAGCTTTTGAGAAGAGCAACTGGGCCAGCTCTCTCCTCAGCCCTAGTTTTTTGCACTACCAACAGGCTCTAGCCAACTCACAGCTGCAGCAGCCCGCTGCTGCATTTTATCCCACAGGTTCTTTCTTCTGCATGGCTCCCGCTAACAGCATTGTCCCCATGATGTACAGTGCTACGCCTGCTACTGTCTCTGCAGCAACTACTCCCGCCACAAGTGTCCCCTACGCAGCAACAGCACCAGCCAATCAGATCATCCTCAAGTAACCACCAGTAACAGAAGTCAGTGCCGTGTTGCTGCTGTTAAAGACGCAAAACAGCTGCTCTGTAAATATTCTGTTAACACCACACACTATCTACAACAATCTCCATGCTGATAACATCACTGAAGAAAAGGTTGTAGACGTTACTCTGATCTCTCATAATAAATTACATAGCTCAGTTACTAGGATTATACTGTGTTAGATAAGTGTCACAGAAGATTATTTTATGCACGCACCTTTGCACCTGCATTAACATGCATCCTCAGTAGTGTGCATAATATCCTGGTTTCTATTTCCTAATCCAATTCTGACAAAGGTCAGAGGTGCATTTAGCCTCTTAATCAGCTGAAATGCAGTGCGTCTCCAGTTCACATATAGGAGGCTCAAAAGGAAAAGAATTAAGTTTTCTGAACAAATCCAACCAGGAAGCACACAGGAAAAACAGGCAGTGCAGGTACAGTAGTAACACCTAATATTAACTGATATTGAAACACGCTGAAATGTTGTTCACTGACCATTTAAAATGATGTAAATAGTACAAGAGGAAGGGATGAGCATGATAGATCTAATCTGAAAACAATACATGTTAAGACCAGGTGTAAAGGGGTCCTATATTGTTTAAATTGTATCCTCAACATATTGAgcaacaaattatttttcctTTCTTGAATGTGTTATgtaaactgaaatgattttcaCATTGATTGTTTTATCTAGTGCCAGCTTTAATTATTTCAAACAAACTAGTAAAACACACTTATTTTAACTTTGAACTTTGAATTTTACATTGTAAAAATTACGAAAGTTTCCTTTAAATGTTCTGAGGGTAGACCATCTATATTGTATAACCTGTCATCCCCAGAGAACAGGATCAGTGCTCCACCTCCTGGTGTGCCTTTGCATTGCATATACAGAATGTTTGCTGCAGATACTTTTTATTTAAGGCAGTGAAGCAACAATGATTCAAACATTTAGGTTTTACCCTctgtattataaattaaaaaagaaatcccaaATATTTGGGTTATCGGTCACAGTGATGGTCGATTTGCTGATGTATCTGGAAGTGGTTTTCACTGGAGCCAGTTTCACAAAGATATACTTTGACTATGGCTTAGGTCAAACCAATCAGTCAGTTTTCAGATGTCTGAATTAATATGCTGCACAGAGATGTCTAGTTCTTAAGTATCTTAAGTAGGACTGATGGCTGACCACATAACCACCGCAGTCCGCTCAGCAGAACATGTTTTGATCCAAAAGTTAGAAGGACATTGTACTGGGAAGATTTCCCTCTCATTTCTCGCTCCGCCATATTGTTAGAAACCGACAAATTATGAGTCATGTTTTCCTCCTTTTTGTAGATTGGTGACACTGGTCAGCAGGTGTCACTcactgttaccatggaaacacTGGTCAACAGGTGTCTTAACATAACTCTATCTTTATTTCTGTGAGACTATCTAACTTGCATCAAAGAAATCGAAGTGCAAAATCCGAACGGGCCTTACATTACAGACCAGTCTAAAATATCTTTGTGAAACCAGCTCCTGGTTCAACATGAACATTTAGCAAACCATGTTTTTAACAAGAGCCTCCACAGCCATTGAATCAGTAAAGGGTGTTAGAATTACTACCACTCAAATTCAAACTAAAGTCCCTGTAATCCCATCAGGGATAAATTGAGTAGTGTGTGAACTGTCAGTCTTAATGTTACAGTCTGTTGTCAGTACTGTATTATTTGAATGTTACAAGTGCCTGAAGAATTGTGCAGATGAGGATATCCCTGCATATTTAAAAGGCTTTGTGTGAAAAATCACTTGATTAAATCTACTTTGCTTAAGTCACATTTAGAGAGAAATGTTTTGCAATGCTACGTCAGTGCATTAAGTCTTTCAATTCATTTTCACAGAGGaaatttgtatgtgtgtactaCTTATAAGAGTTGATATCAAACTTAAATTCATTTGTTTCAATTTTAAGATGATTAATGTATGGCAATTGTTTCCAAATTAGTTTCATGCACAGTACAATACTTTTAAGGAGGTAGATGTTTGGTGAAGTTTAGTTGTGTATGCTTGATACCACATTATGCAATTACCCGTCTTTGTTTGAAACTGACAGCAGACAGAGTGGGTATTGTGTCTGGTTAAGTGAAAAACAAAACCGTTTTCACTCATATACCTAACATTCTCTTGAATACTTTTCATGTAAGTTTTTAGTTCCCTGTTTTGTAAGCAGCTTGTGCAAATATCAACCTTtccttttaatgtttctgatgtCTTTTCAAATGACTGAtataagtttttgtttttttatgaaaatgtgtgtgtacaaTTTTGTGTGATTAACTCTGACAATCCACCAAGAGATATTTCATTtgttcactttttatttttattttttcttcattttttatgaaaagttTGACACATTATTGGTTGGAATATAAGGAGTATACTTAGAGTATACTACTGCATATTTTACTAGTTTAACATTAGAAAAGAAggcttttaaaatgtattctctTCTATTTTATGATGAATGTAATTTATTAAACTGACTTTAGCTCTGCTGGAGGTTCCTCAAAGGGCCTTGATCTGTTGTATTAGCCTATGATAAGCCGTCTTGTGTCAAGGGTTTAAATGTTGGAGCAAAAACAAAGCTTAAAACATTTCATCCCTGTCACTGCCTTGTCACCTGTGAGGGACAACAAACCTTTGTATGAGCAAGGCAATAGAATTGCTTTTAATGTACAAAAGTTCATTGTACAGGCCACATTTTATGAAAAGTAACTTTCATaatagtgtaataatagtttgtcatttaatTGTTTGGATGTGTTGCTGAGGCAATCTGAAGTTGCAGTGattaaaaactgtatttttgtaGGGGATGCTTTGGTTTTTCCTCCTCACAATAACACATTAGATTGTACTGTCATATATTTGACTTTATTATGCCATGGTGAAACACTGTAAGTGATCCAGTGCATGAGaatatattttgaaatgtgaattttgtgttttatatggtTTTCACTGCATGTTAACATCTTGCAGCAAACATAATCCACTCTCAGATAATCTGCAGTCAGGGGGTCAGCAGTTGATGCTTCAGCGGCTGTTTGAaccttcattttcttttcataataTGTTTGCTTTTCAAGTTTAGGTTGTTATTAGATATATGACATGTGTTCCCTTATTTATTTTACCTGCAAATAAAAAGGCATATAGCCAAATGTATGTTTTACACCTTTTGGCAAAAAGCTTGAATGTCATGGATACACCCCCACATGGAGGTTGTTTGAGATTTGGGTCACCCAGTCAAAAAGATGTGGACAGTAAGAATGTTTGGTCTGACTGACTAAAGCACTTTCTCAACCGTCAGACTGAGAGGACATGCTTTTTGTAAACTTTGCCTTATCTTTAATCTATTCCTAAGTTTGTATTTGTTCAGTAACTAAGAATTTCATTTTgtctaataaataaaaagcatttCACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640987.1 lncRNA downstream 230578 18208738 ~ 18211956 (-) True LOC120569840
TU168090 lncRNA downstream 350004 18092327 ~ 18092530 (-) True G125000
TU167930 lncRNA downstream 419057 18022409 ~ 18023477 (-) True G124872
XR_005640876.1 lncRNA downstream 620047 17737284 ~ 17822487 (-) False LOC120569506
TU168246 lncRNA upstream 241772 18700887 ~ 18702962 (-) False G125090
TU168251 lncRNA upstream 241772 18700887 ~ 18702696 (-) False G125090
TU168245 lncRNA upstream 242617 18701732 ~ 18702696 (-) False G125090
XR_005641073.1 lncRNA upstream 356731 18815846 ~ 18819321 (-) True LOC120570508
TU168264 lncRNA upstream 356731 18815846 ~ 18816009 (-) False LOC120570508
XM_039818892.1 mRNA downstream 1162 18428988 ~ 18441372 (-) True LOC120570503
XM_039817990.1 mRNA downstream 23284 18352353 ~ 18419250 (-) False LOC120569851
XM_039817989.1 mRNA downstream 23284 18352353 ~ 18419250 (-) True LOC120569851
XM_039817920.1 mRNA downstream 120806 18262862 ~ 18321728 (-) False LOC120569811
XM_039817545.1 mRNA upstream 7810 18466925 ~ 18535438 (-) True hs6st3b
XM_039817544.1 mRNA upstream 122121 18581236 ~ 18598455 (-) True dnajc3a
XM_039817379.1 mRNA upstream 140357 18599472 ~ 18601382 (-) True LOC120569518
XM_039818434.1 mRNA upstream 144008 18603123 ~ 18605171 (-) True LOC120570204
XM_039818477.1 mRNA upstream 147311 18606426 ~ 18608814 (-) False LOC120570238
XR_005640956.1 other downstream 278785 18156732 ~ 18163749 (-) False prkra
TU168094 other downstream 327445 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other downstream 327445 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other downstream 327445 18113572 ~ 18115089 (-) False LOC120569287
TU167228 other downstream 2061769 16378609 ~ 16380765 (-) False gcgb
TU168240 other upstream 236365 18695480 ~ 18699802 (-) True G125089
TU168241 other upstream 236365 18695480 ~ 18696368 (-) False G125089
TU168243 other upstream 242533 18701648 ~ 18704552 (-) True G125090
TU168242 other upstream 243980 18703095 ~ 18704677 (-) False G125090
TU168244 other upstream 244014 18703129 ~ 18704677 (-) False G125090

Expression Profile